RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 S1PR5Q9H228 398 aa12.99□□□□□ -0.33
VTI1A-208ENST00000494728 PCDHA12Q9UN75 941 aa12.99□□□□□ -0.33
VTI1A-208ENST00000494728 HCFC2Q9Y5Z7 792 aa12.99□□□□□ -0.33
VTI1A-208ENST00000494728 VWA8A3KMH1 1905 aa12.99□□□□□ -0.33
VTI1A-208ENST00000494728 DOCK6Q96HP0 2047 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 MTCL1Q9Y4B5 1905 aaKnown RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 DKC1O60832 514 aaKnown RBP eCLIP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 MED24O75448 989 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 LYPLA2O95372 231 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 SPATA31C1P0DKV0 1188 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 ALADP13716 330 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 ATP2B1P20020 1258 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 GLRA2P23416 452 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 SP100P23497 879 aaPredicted RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 MCM7P33993 719 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 TECP42680 631 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 RARRES1P49788 294 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 RAB27AP51159 221 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 MBTD1Q05BQ5 628 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 NBR1Q14596 966 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 CBX2Q14781 532 aaPredicted RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 HERC4Q5GLZ8 1057 aaPredicted RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 PDE12Q6L8Q7 609 aaKnown RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 GLB1LQ6UWU2 654 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 TMC7Q7Z402 723 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 SRGAP1Q7Z6B7 1085 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 MRPL43Q8N983 215 aaKnown RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 IGSF21Q96ID5 467 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 CPB2Q96IY4 423 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 POP1Q99575 1024 aaKnown RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 CDCA3Q99618 268 aaPredicted RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 INO80BQ9C086 356 aaPredicted RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 NGRNQ9NPE2 291 aaKnown RBP12.98□□□□□ -0.33
VTI1A-208ENST00000494728 GPRC5CQ9NQ84 441 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 HES2Q9Y543 173 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 PPME1Q9Y570 386 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 DOCK8Q8NF50 2099 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 MYH11P35749 1972 aa12.98□□□□□ -0.33
VTI1A-208ENST00000494728 F8W810 466 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 B4GALT5O43286 388 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 USO1O60763 962 aaKnown RBP12.97□□□□□ -0.33
VTI1A-208ENST00000494728 CLASP2O75122 1294 aaKnown RBP12.97□□□□□ -0.33
VTI1A-208ENST00000494728 BAG4O95429 457 aaKnown RBP12.97□□□□□ -0.33
VTI1A-208ENST00000494728 POMCP01189 267 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 GALTP07902 379 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 ARL2P36404 184 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 PTENP60484 403 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 KRT17Q04695 432 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 SMC1AQ14683 1233 aaKnown RBP12.97□□□□□ -0.33
VTI1A-208ENST00000494728 KANK3Q6NY19 840 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 HFE2Q6ZVN8 426 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 OTUD6AQ7L8S5 288 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 MRPL10Q7Z7H8 261 aaKnown RBP12.97□□□□□ -0.33
VTI1A-208ENST00000494728 CDR2LQ86X02 465 aaPredicted RBP12.97□□□□□ -0.33
VTI1A-208ENST00000494728 VPS52Q8N1B4 723 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 TCP11Q8WWU5 503 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 TMEM169Q96HH4 297 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 RPGRIP1Q96KN7 1286 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 RSAD1Q9HA92 442 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 MARCH5Q9NX47 278 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 PUF60Q9UHX1 559 aaKnown RBP12.97□□□□□ -0.33
VTI1A-208ENST00000494728 LIMCH1Q9UPQ0 1083 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 HCN4Q9Y3Q4 1203 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 IPPQ9Y573 584 aa12.97□□□□□ -0.33
VTI1A-208ENST00000494728 CFAP54Q96N23 3096 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.96□□□□□ -0.33
VTI1A-208ENST00000494728 GAS2O43903 313 aaKnown RBP12.96□□□□□ -0.33
VTI1A-208ENST00000494728 EDN1P05305 212 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 WEE2P0C1S8 567 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 EPCAMP16422 314 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 ALDH7A1P49419 539 aaKnown RBP12.96□□□□□ -0.33
VTI1A-208ENST00000494728 TRIM29Q14134 588 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 PTPN14Q15678 1187 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 POTEGQ6S5H5 508 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 CATSPER3Q86XQ3 398 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 IFNLR1Q8IU57 520 aaPredicted RBP12.96□□□□□ -0.33
VTI1A-208ENST00000494728 BSNDQ8WZ55 320 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 ZFP42Q96MM3 310 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 PHF7Q9BWX1 381 aaPredicted RBP12.96□□□□□ -0.33
VTI1A-208ENST00000494728 POLR3FQ9H1D9 316 aaPredicted RBP12.96□□□□□ -0.33
VTI1A-208ENST00000494728 NXF3Q9H4D5 531 aaKnown RBP12.96□□□□□ -0.33
VTI1A-208ENST00000494728 ANKEF1Q9NU02 776 aa12.96□□□□□ -0.33
VTI1A-208ENST00000494728 PDCD11Q14690 1871 aaKnown RBP12.95□□□□□ -0.34
VTI1A-208ENST00000494728 TTLL13PA6NNM8 815 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 INO80B-WBP1J3KQ70 363 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 DGAT1O75907 488 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 ERLIN2O94905 339 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 CTSAP10619 480 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 SKIP12755 728 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 ARF4P18085 180 aaPredicted RBP12.95□□□□□ -0.34
VTI1A-208ENST00000494728 NCLP19338 710 aaKnown RBP12.95□□□□□ -0.34
VTI1A-208ENST00000494728 CA8P35219 290 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 MLH1P40692 756 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 RNASELQ05823 741 aaKnown RBP12.95□□□□□ -0.34
VTI1A-208ENST00000494728 ZNF174Q15697 407 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 ECM1Q16610 540 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 MAEAQ7L5Y9 396 aa12.95□□□□□ -0.34
VTI1A-208ENST00000494728 DDX53Q86TM3 631 aaKnown RBP12.95□□□□□ -0.34
VTI1A-208ENST00000494728 C12orf76Q8N812 135 aaPredicted RBP12.95□□□□□ -0.34
VTI1A-208ENST00000494728 C8orf76Q96K31 380 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms