RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 NOTUMQ6P988 496 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 KRBA2Q6ZNG9 492 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 SLC24A5Q71RS6 500 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 RTN4RL1Q86UN2 441 aaPredicted RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 SFR1Q86XK3 245 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 FMR1NBQ8N0W7 255 aaPredicted RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 LINC01599Q8WXQ3 324 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 CCDC51Q96ER9 411 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 PAGE5Q96GU1 130 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 CCDC113Q9H0I3 377 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 FZD8Q9H461 694 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 ARHGAP28Q9P2N2 729 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 CNTNAP2Q9UHC6 1331 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 GOLGA6L22H0YM25 854 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 ACKR2O00590 384 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 GADD45BO75293 160 aaPredicted RBP11.97□□□□□ -0.49
VPS13D-210ENST00000489961 MAPTP10636 758 aaKnown RBP11.97□□□□□ -0.49
VPS13D-210ENST00000489961 ARF4P18085 180 aaPredicted RBP11.97□□□□□ -0.49
VPS13D-210ENST00000489961 SARSP49591 514 aaKnown RBP11.97□□□□□ -0.49
VPS13D-210ENST00000489961 AMHR2Q16671 573 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 LRIT3Q3SXY7 679 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 HERC4Q5GLZ8 1057 aaPredicted RBP11.97□□□□□ -0.49
VPS13D-210ENST00000489961 HAUS6Q7Z4H7 955 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 NPAS4Q8IUM7 802 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 HERC6Q8IVU3 1022 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 TMEM161BQ8NDZ6 487 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 TOP1MTQ969P6 601 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 CPB2Q96IY4 423 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 ZBED2Q9BTP6 218 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 BLZF1Q9H2G9 400 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 MRPL44Q9H9J2 332 aaKnown RBP11.97□□□□□ -0.49
VPS13D-210ENST00000489961 LRFN2Q9ULH4 789 aa11.97□□□□□ -0.49
VPS13D-210ENST00000489961 TTC3P53804 2025 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 GBF1Q92538 1859 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 A0A0U1RQF3 1178 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 PVALEFA0A1B0GWK0 134 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 FRMD3A2A2Y4 597 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 C9IYK1 514 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 N4BP3O15049 544 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 B4GALT5O43286 388 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 GTPBP6O43824 516 aaPredicted RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 KINO60870 393 aaKnown RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 UPP2O95045 317 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 IBSPP21815 317 aaPredicted RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 NMT1P30419 496 aaKnown RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 HOXA11P31270 313 aaPredicted RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 RAB27AP51159 221 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 SMAD3P84022 425 aaKnown RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 COASYQ13057 564 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 CUL4BQ13620 913 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 STXBP4Q6ZWJ1 553 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 UNC13DQ70J99 1090 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 APBB1IPQ7Z5R6 666 aaPredicted RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 GRAMD1CQ8IYS0 662 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 ENGASEQ8NFI3 743 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 KCNN1Q92952 543 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 CCDC47Q96A33 483 aaKnown RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 TIGD1Q96MW7 591 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 ADPGKQ9BRR6 497 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 TRAIPQ9BWF2 469 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 MRPL4Q9BYD3 311 aaKnown RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 ST6GALNAC4Q9H4F1 302 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 ELAC1Q9H777 363 aaKnown RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 OLFML3Q9NRN5 406 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 FAM105AQ9NUU6 356 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 HOOK1Q9UJC3 728 aaKnown RBP11.96□□□□□ -0.49
VPS13D-210ENST00000489961 PCDHB7Q9Y5E2 793 aa11.96□□□□□ -0.49
VPS13D-210ENST00000489961 A0A1B0GUA9 196 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 GRXCR1A8MXD5 290 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 NR1I2O75469 434 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 GJB5O95377 273 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 GCNT3O95395 438 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 CASP1P29466 404 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 FAM189BP81408 668 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 SNW1Q13573 536 aaKnown RBP11.95□□□□□ -0.5
VPS13D-210ENST00000489961 ALCAMQ13740 583 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 RAB30Q15771 203 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 ATF7IP2Q5U623 682 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 FAM117BQ6P1L5 589 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 SLC27A1Q6PCB7 646 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 TAS1R3Q7RTX0 852 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 ZNF720Q7Z2F6 126 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 ECHDC2Q86YB7 292 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 HACE1Q8IYU2 909 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 HVCN1Q96D96 273 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 PGBD4Q96DM1 585 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 BICD1Q96G01 975 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 FIZ1Q96SL8 496 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 TRIM6Q9C030 488 aaPredicted RBP11.95□□□□□ -0.5
VPS13D-210ENST00000489961 TMEM161AQ9NX61 479 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 TBC1D7Q9P0N9 293 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 MSRAQ9UJ68 235 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 TBX20Q9UMR3 447 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 PCDHB13Q9Y5F0 798 aa11.95□□□□□ -0.5
VPS13D-210ENST00000489961 HOXA2O43364 376 aa11.94□□□□□ -0.5
VPS13D-210ENST00000489961 TLL1O43897 1013 aa11.94□□□□□ -0.5
VPS13D-210ENST00000489961 ZNF623O75123 536 aa11.94□□□□□ -0.5
VPS13D-210ENST00000489961 EOMESO95936 686 aa11.94□□□□□ -0.5
VPS13D-210ENST00000489961 RABGGTBP53611 331 aa11.94□□□□□ -0.5
VPS13D-210ENST00000489961 GTF2BQ00403 316 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms