RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SLC18A3Q16572 532 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 ENOSF1Q7L5Y1 443 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 HIPK4Q8NE63 616 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 C7orf25Q9BPX7 421 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 TRIM49P0CI25 452 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 TRIM49CP0CI26 452 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 GNA15P30679 374 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 ACTN3Q08043 901 aaPredicted RBP17.51■□□□□ 0.39
COL7A1-210ENST00000487017 SLC27A3Q5K4L6 730 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 LXNQ9BS40 222 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 SSU72P8A0A1W2PR75 194 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 SLC16A3O15427 465 aaKnown RBP17.51■□□□□ 0.39
COL7A1-210ENST00000487017 PPP1R37O75864 691 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 TAC1P20366 129 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.51■□□□□ 0.39
COL7A1-210ENST00000487017 FAM167AQ96KS9 214 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 AGPAT1Q99943 283 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 TRIM15Q9C019 465 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 SUDS3Q9H7L9 328 aaPredicted RBP17.51■□□□□ 0.39
COL7A1-210ENST00000487017 EMSYQ7Z589 1322 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 MDH1P40925 334 aaKnown RBP17.51■□□□□ 0.39
COL7A1-210ENST00000487017 MKRN3Q13064 507 aaKnown RBP17.51■□□□□ 0.39
COL7A1-210ENST00000487017 PDIA2Q13087 525 aaKnown RBP17.51■□□□□ 0.39
COL7A1-210ENST00000487017 GRAMD1AQ96CP6 724 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 MAPK6Q16659 721 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 SRLQ86TD4 932 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 TTC1Q99614 292 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 DDX56Q9NY93 547 aaKnown RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 ARHGEF37A1IGU5 675 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 KPNA7A9QM74 516 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 ARFIP2P53365 341 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 OCRLQ01968 901 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 RC3H1Q5TC82 1133 aaKnown RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 RAD9BQ6WBX8 426 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 ZBED8Q8IZ13 594 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 VPS39Q96JC1 886 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 EPN3Q9H201 632 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 ETNK1Q9HBU6 452 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 EEF1B2P24534 225 aaKnown RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 CDR2Q01850 454 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 C12orf60Q5U649 245 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 CCNI2Q6ZMN8 369 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 TRIM72Q6ZMU5 477 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 C1orf54Q8WWF1 131 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 FGD4Q96M96 766 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 DCTN4Q9UJW0 460 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 HEY1Q9Y5J3 304 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 TSPOAP1O95153 1857 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 KRT7P08729 469 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 HSPA9P38646 679 aaKnown RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 TNFAIP2Q03169 654 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 DRP2Q13474 957 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 C1orf146Q5VVC0 180 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 IZUMO3Q5VZ72 239 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 LRIG3Q6UXM1 1119 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 MTRQ99707 1265 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 QTRT2Q9H974 415 aaKnown RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 RAVER2Q9HCJ3 691 aaKnown RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 FAM196BA6NMK8 535 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 NVLO15381 856 aaKnown RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 EYA4O95677 639 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 CHEK2O96017 543 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 ZSCAN20P17040 1043 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-210ENST00000487017 TRIML2Q8N7C3 387 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 MS4A14Q96JA4 679 aa17.5■□□□□ 0.39
COL7A1-210ENST00000487017 PAMP19021 973 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 ANXA13P27216 316 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 NCAPHQ15003 741 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 STXBP2Q15833 593 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 BRINP3Q76B58 766 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 KLC4Q9NSK0 619 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 GPC3P51654 580 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 ARPP19P56211 112 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 KRT17Q04695 432 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 ATP11CQ8NB49 1132 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 HPS3Q969F9 1004 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 UBN1Q9NPG3 1134 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 KLHL8Q9P2G9 620 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-210ENST00000487017 F5H6K3 240 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 KITP10721 976 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 KLRC3Q07444 240 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 PDCD2Q16342 344 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-210ENST00000487017 ABI1Q8IZP0 508 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 PPM1NQ8N819 430 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 GIMAP8Q8ND71 665 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-210ENST00000487017 SAAL1Q96ER3 474 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 AGPAT5Q9NUQ2 364 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 ANTXR2P58335 489 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 GPR162Q16538 588 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 RNF139Q8WU17 664 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 HPCAL4Q9UM19 191 aa17.49■□□□□ 0.39
COL7A1-210ENST00000487017 MEFVO15553 781 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-210ENST00000487017 RTN2O75298 545 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 CHGBP05060 677 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 KRT10P13645 584 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 FGFR4P22455 802 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 ACAD11Q709F0 780 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 KCNV2Q8TDN2 545 aa17.48■□□□□ 0.39
COL7A1-210ENST00000487017 PSPC1Q8WXF1 523 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms