RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CCDC192P0DO97 292 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 SFPQP23246 707 aaKnown RBP eCLIP13.44□□□□□ -0.265e-6■□□□□ 9.6
SDC1-206ENST00000482879 TYRO3Q06418 890 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 KCNA1Q09470 495 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 LPIN1Q14693 890 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 MBTPS1Q14703 1052 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 PCBP1Q15365 356 aaKnown RBP eCLIP13.44□□□□□ -0.26
SDC1-206ENST00000482879 FAM187BQ17R55 369 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 BMT2Q1RMZ1 405 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 COBLL1Q53SF7 1204 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 TSHZ1Q6ZSZ6 1077 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 FAM228AQ86W67 206 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 ADSSL1Q8N142 457 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 GUF1Q8N442 669 aaKnown RBP13.44□□□□□ -0.26
SDC1-206ENST00000482879 USP38Q8NB14 1042 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 MLKLQ8NB16 471 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 BICD1Q96G01 975 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 SCLYQ96I15 445 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 MRPL4Q9BYD3 311 aaKnown RBP13.44□□□□□ -0.26
SDC1-206ENST00000482879 WNT8AQ9H1J5 351 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 TMEM206Q9H813 350 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 AGO3Q9H9G7 860 aaKnown RBP13.44□□□□□ -0.26
SDC1-206ENST00000482879 ST3GAL5Q9UNP4 418 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 EXOC7Q9UPT5 735 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 USP20Q9Y2K6 914 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 PPP1R3GB7ZBB8 358 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 GPR182O15218 404 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 PARNO95453 639 aaKnown RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 CD44P16070 742 aaKnown RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 ITGB8P26012 769 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 CD52P31358 61 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 HOXD13P35453 343 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 PPP1R2P41236 205 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 NCBP1Q09161 790 aaKnown RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 NFX1Q12986 1120 aaKnown RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 PAK2Q13177 524 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 PRPF4BQ13523 1007 aaKnown RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 STX1AQ16623 288 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 AMHR2Q16671 573 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 KNOP1Q1ED39 458 aaKnown RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 TMEM132AQ24JP5 1023 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 DPCR1Q3MIW9 517 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 KLHL10Q6JEL2 608 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 PPP4R3CPQ6ZMV5 832 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 MAP4K3Q8IVH8 894 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 DHTKD1Q96HY7 919 aaPredicted RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 PRIMPOLQ96LW4 560 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 TARS2Q9BW92 718 aaKnown RBP13.43□□□□□ -0.26
SDC1-206ENST00000482879 ERVK-5Q9HDB9 667 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 PADI3Q9ULW8 664 aa13.43□□□□□ -0.26
SDC1-206ENST00000482879 TTLL13PA6NNM8 815 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 RBAK-RBAKDNI3L0D1 243 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 PSMA7O14818 248 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 B4GALT5O43286 388 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 TSPAN1O60635 241 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 NBNO60934 754 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 EDN1P05305 212 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 ARF4P18085 180 aaPredicted RBP13.42□□□□□ -0.26
SDC1-206ENST00000482879 LIG4P49917 911 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 GPNMBQ14956 572 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 CPB2Q96IY4 423 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 ACO2Q99798 780 aaKnown RBP13.42□□□□□ -0.26
SDC1-206ENST00000482879 FUCA2Q9BTY2 467 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 GBP3Q9H0R5 595 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 IKZF4Q9H2S9 585 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 DACH1Q9UI36 760 aa13.42□□□□□ -0.26
SDC1-206ENST00000482879 ANKRD63C9JTQ0 380 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 HNRNPDLO14979 420 aaKnown RBP13.41□□□□□ -0.26
SDC1-206ENST00000482879 PIGRP01833 764 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 AXLP30530 894 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 RFC2P35250 354 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 MATR3P43243 847 aaKnown RBP eCLIP13.41□□□□□ -0.26
SDC1-206ENST00000482879 ATF7IP2Q5U623 682 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 MFSD5Q6N075 450 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 ZPBP2Q6X784 338 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 DEFB128Q7Z7B8 93 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 TMEM199Q8N511 208 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 NELFBQ8WX92 580 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 SEPT8Q92599 483 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 ZBTB45Q96K62 511 aaPredicted RBP13.41□□□□□ -0.26
SDC1-206ENST00000482879 TCHPQ9BT92 498 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 ANP32EQ9BTT0 268 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 IFIH1Q9BYX4 1025 aaKnown RBP13.41□□□□□ -0.26
SDC1-206ENST00000482879 KCTD10Q9H3F6 313 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 SEMA6BQ9H3T3 888 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 AGPAT5Q9NUQ2 364 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 ZMYND8Q9ULU4 1186 aaPredicted RBP13.41□□□□□ -0.26
SDC1-206ENST00000482879 CTNND2Q9UQB3 1225 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 PIN4Q9Y237 131 aaKnown RBP13.41□□□□□ -0.26
SDC1-206ENST00000482879 ZMYM2Q9UBW7 1377 aa13.41□□□□□ -0.26
SDC1-206ENST00000482879 CNTNAP2Q9UHC6 1331 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 MKI67P46013 3256 aaKnown RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 TISP43B9A030 160 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 PDXKO00764 312 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 N4BP3O15049 544 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CLIC2O15247 247 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 TGFB1I1O43294 461 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CALUO43852 315 aaPredicted RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 CXCL10P02778 98 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CSF2RAP15509 400 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms