RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ARSHQ5FYA8 562 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 NUGGCQ68CJ6 796 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 C15orf39Q6ZRI6 1047 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 NEK8Q86SG6 692 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 NCAPG2Q86XI2 1143 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 LRRC34Q8IZ02 419 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 NT5C3AQ9H0P0 336 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SPON1Q9HCB6 807 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 KRT82Q9NSB4 513 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CYP39A1Q9NYL5 469 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 TTC4O95801 387 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 TAC1P20366 129 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ZCRB1Q8TBF4 217 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ADAMTS16Q8TE57 1224 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 PIGBQ92521 554 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 MAF1Q9H063 256 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 DHX36Q9H2U1 1008 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 WNK3Q9BYP7 1800 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 FOXO6A8MYZ6 492 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 TJP3O95049 919 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 EZRP15311 586 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 RPA1P27694 616 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 TNIP1Q15025 636 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 VSIG1Q86XK7 387 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 GSPT2Q8IYD1 628 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SLC7A14Q8TBB6 771 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 FBXO41Q8TF61 875 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 NOC4LQ9BVI4 516 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 C1orf21Q9H246 121 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 BMP2KQ9NSY1 1161 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PHF24Q9UPV7 400 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CNTNAP4Q9C0A0 1308 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 COL5A3P25940 1745 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 H0YJX3 145 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PIK3CDO00329 1044 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 RIPK2O43353 540 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CDH16O75309 829 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SNUPNO95149 360 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 WEE2P0C1S8 567 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 BCRP11274 1271 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 YBX3P16989 372 aaKnown RBP eCLIP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 COPS2P61201 443 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PRPF4BQ13523 1007 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CTTNQ14247 550 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PDK4Q16654 411 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 EPC2Q52LR7 807 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SPAG5Q96R06 1193 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 RAB17Q9H0T7 212 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 ARHGEF4Q9NR80 690 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 KLHL14Q9P2G3 628 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SERPINA10Q9UK55 444 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SORCS3Q9UPU3 1222 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 ASTN1O14525 1302 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC85CA6NKD9 419 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 LRRN2O75325 713 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PECAM1P16284 738 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 AFMP43652 599 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 AFDNP55196 1824 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 ADAM9Q13443 819 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 C1orf220Q5T0J3 134 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 FOXB2Q5VYV0 432 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 UBR7Q8N806 425 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SMC1BQ8NDV3 1235 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SAAL1Q96ER3 474 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 MIPEPQ99797 713 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SPC25Q9HBM1 224 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 TYW1Q9NV66 732 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 TFR2Q9UP52 801 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SYNGAP1Q96PV0 1343 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 DKC1O60832 514 aaKnown RBP eCLIP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 FCER1AP12319 257 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC152Q4G0S7 254 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 SPOUT1Q5T280 376 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 DTHD1Q6ZMT9 781 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CATIPQ7Z7H3 387 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 TRIM47Q96LD4 638 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 NAP1L3Q99457 506 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 TRMT112Q9UI30 125 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 EXOC7Q9UPT5 735 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PPME1Q9Y570 386 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CNTNAP1P78357 1384 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 ESYT3A0FGR9 886 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PALMO75781 387 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 ENDOD1O94919 500 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 IL2RBP14784 551 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 ALOX15P16050 662 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CCT6AP40227 531 aaKnown RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 MSH2P43246 934 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CRY2Q49AN0 593 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 C3orf62Q6ZUJ4 267 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC121Q6ZUS5 278 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 HOOK3Q86VS8 718 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 TBC1D5Q92609 795 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 MAML3Q96JK9 1138 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 ZBTB3Q9H5J0 574 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 DMAP1Q9NPF5 467 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-220ENST00000471834 NDUFA13Q9P0J0 144 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 UVRAGQ9P2Y5 699 aa5.76□□□□□ -1.49
SYNE1-220ENST00000471834 PDHBP11177 359 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PAX7P23759 505 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms