RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 BRD1O95696 1058 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 POMCP01189 267 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 SSBP05455 408 aaKnown RBP eCLIP23.03■■□□□ 1.28
COL6A1-203ENST00000466285 P4HBP07237 508 aaKnown RBP23.03■■□□□ 1.28
COL6A1-203ENST00000466285 ASGR2P07307 311 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 DDX53Q86TM3 631 aaKnown RBP23.03■■□□□ 1.28
COL6A1-203ENST00000466285 SMG8Q8ND04 991 aaKnown RBP23.03■■□□□ 1.28
COL6A1-203ENST00000466285 ASAP3Q8TDY4 903 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 SLC7A3Q8WY07 619 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 KCNH6Q9H252 994 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 RNF39Q9H2S5 420 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 FAM86C1Q9NVL1 165 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 MARCH5Q9NX47 278 aa23.03■■□□□ 1.28
COL6A1-203ENST00000466285 ORC3Q9UBD5 711 aaPredicted RBP23.03■■□□□ 1.28
COL6A1-203ENST00000466285 A0A087WWV3 80 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 GCFC2P16383 781 aaKnown RBP23.02■■□□□ 1.28
COL6A1-203ENST00000466285 RAB27AP51159 221 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 EPHA7Q15375 998 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 MRPL10Q7Z7H8 261 aaKnown RBP23.02■■□□□ 1.28
COL6A1-203ENST00000466285 C4orf19Q8IY42 314 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 FAM177A1Q8N128 213 aaPredicted RBP23.02■■□□□ 1.28
COL6A1-203ENST00000466285 RNF149Q8NC42 400 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 KREMEN2Q8NCW0 462 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 PSPC1Q8WXF1 523 aaKnown RBP23.02■■□□□ 1.28
COL6A1-203ENST00000466285 RSAD1Q9HA92 442 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 HES2Q9Y543 173 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 CACNA1HO95180 2353 aa23.02■■□□□ 1.28
COL6A1-203ENST00000466285 TSPAN1O60635 241 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 JAK2O60674 1132 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 RNASELQ05823 741 aaKnown RBP23.01■■□□□ 1.27
COL6A1-203ENST00000466285 ME3Q16798 604 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 TPRNQ4KMQ1 711 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 XKR9Q5GH70 373 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 TMC5Q6UXY8 1006 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 FERMT3Q86UX7 667 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 CPB2Q96IY4 423 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 INO80BQ9C086 356 aaPredicted RBP23.01■■□□□ 1.27
COL6A1-203ENST00000466285 IRAK3Q9Y616 596 aa23.01■■□□□ 1.27
COL6A1-203ENST00000466285 CDKL5O76039 1030 aa23■■□□□ 1.27
COL6A1-203ENST00000466285 RFC5P40937 340 aa23■■□□□ 1.27
COL6A1-203ENST00000466285 CDC42EP1Q00587 391 aa23■■□□□ 1.27
COL6A1-203ENST00000466285 KIAA1841Q6NSI8 718 aa23■■□□□ 1.27
COL6A1-203ENST00000466285 TAS1R1Q7RTX1 841 aa23■■□□□ 1.27
COL6A1-203ENST00000466285 SUGP1Q8IWZ8 645 aaKnown RBP23■■□□□ 1.27
COL6A1-203ENST00000466285 DMDP11532 3685 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 TBX3O15119 743 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 SLITRK3O94933 977 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 CNPP09543 421 aaKnown RBP22.99■■□□□ 1.27
COL6A1-203ENST00000466285 ITIH3Q06033 890 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 CAPSQ13938 189 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 AMHR2Q16671 573 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 SRGAP1Q7Z6B7 1085 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 ZBTB33Q86T24 672 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 CDR2LQ86X02 465 aaPredicted RBP22.99■■□□□ 1.27
COL6A1-203ENST00000466285 NSUN7Q8NE18 718 aaKnown RBP22.99■■□□□ 1.27
COL6A1-203ENST00000466285 ZFP42Q96MM3 310 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 JPH2Q9BR39 696 aaPredicted RBP22.99■■□□□ 1.27
COL6A1-203ENST00000466285 MIOSQ9NXC5 875 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 CACNG4Q9UBN1 327 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 PRG3Q9Y2Y8 225 aaPredicted RBP22.99■■□□□ 1.27
COL6A1-203ENST00000466285 IPPQ9Y573 584 aa22.99■■□□□ 1.27
COL6A1-203ENST00000466285 NRP1O14786 923 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 B4GALT5O43286 388 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 LILRB3O75022 631 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 MYBP10242 640 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 SKIP12755 728 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 KRT2P35908 639 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 MLH1P40692 756 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 CES5AQ6NT32 575 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 TPH2Q8IWU9 490 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 GTF3C6Q969F1 213 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 KLHL5Q96PQ7 755 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 MTRQ99707 1265 aa22.98■■□□□ 1.27
COL6A1-203ENST00000466285 EIF2AK1Q9BQI3 630 aaKnown RBP22.98■■□□□ 1.27
COL6A1-203ENST00000466285 NXF3Q9H4D5 531 aaKnown RBP22.98■■□□□ 1.27
COL6A1-203ENST00000466285 NCLP19338 710 aaKnown RBP22.97■■□□□ 1.27
COL6A1-203ENST00000466285 MBTD1Q05BQ5 628 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 URGCPQ8TCY9 931 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 PGBD4Q96DM1 585 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 B3GALT6Q96L58 329 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 GAD1Q99259 594 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 ZSWIM4Q9H7M6 989 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 DZANK1Q9NVP4 752 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 DOCK8Q8NF50 2099 aa22.97■■□□□ 1.27
COL6A1-203ENST00000466285 POTEMA6NI47 508 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 BTBD18B2RXH4 712 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 C2CD2LO14523 706 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 EFEMP2O95967 443 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 AVPR2P30518 371 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 MTHFRP42898 656 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 SCNN1GP51170 649 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 CLCN4P51793 760 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 PTENP60484 403 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 COLGALT2Q8IYK4 626 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 TDRD5Q8NAT2 981 aaKnown RBP22.96■■□□□ 1.27
COL6A1-203ENST00000466285 NECTIN4Q96NY8 510 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 HSD17B14Q9BPX1 270 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 APOL6Q9BWW8 343 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 TMEM60Q9H2L4 133 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 GPRC5CQ9NQ84 441 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms