RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ECHDC2Q86YB7 292 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 LRRC43Q8N309 656 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 ZNF579Q8NAF0 562 aaKnown RBP19.67■□□□□ 0.74
COL7A1-205ENST00000465238 LINC00301Q8NCQ3 95 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 SMRP1Q8NCR6 262 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 NLRP7Q8WX94 980 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 CDK5RAP3Q96JB5 506 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 ZNF668Q96K58 619 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-205ENST00000465238 CASD1Q96PB1 797 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 CEP89Q96ST8 783 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 CDCA3Q99618 268 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-205ENST00000465238 PUF60Q9UHX1 559 aaKnown RBP19.67■□□□□ 0.74
COL7A1-205ENST00000465238 FBXO2Q9UK22 296 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-205ENST00000465238 DBR1Q9UK59 544 aaKnown RBP19.67■□□□□ 0.74
COL7A1-205ENST00000465238 PCDHGC5Q9Y5F6 944 aa19.67■□□□□ 0.74
COL7A1-205ENST00000465238 MORC2Q9Y6X9 1032 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-205ENST00000465238 GLP2RO95838 553 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 EOMESO95936 686 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 PPM1AP35813 382 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 ERVFC1P60507 584 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 PLCB3Q01970 1234 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 GRIN1Q05586 938 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 ECM1Q16610 540 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 CABP7Q86V35 215 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 KRI1Q8N9T8 703 aaKnown RBP19.66■□□□□ 0.74
COL7A1-205ENST00000465238 MMTAG2Q9BU76 263 aaKnown RBP19.66■□□□□ 0.74
COL7A1-205ENST00000465238 GCOM2Q9BZD3 368 aaPredicted RBP19.66■□□□□ 0.74
COL7A1-205ENST00000465238 CSRNP2Q9H175 543 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 DDX19AQ9NUU7 478 aaKnown RBP19.66■□□□□ 0.74
COL7A1-205ENST00000465238 RNF19AQ9NV58 838 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 DACT1Q9NYF0 836 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 DNM3Q9UQ16 869 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 ARID2Q68CP9 1835 aa19.66■□□□□ 0.74
COL7A1-205ENST00000465238 IGKV6-21A0A0C4DH24 114 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 A0A0U1RQF3 1178 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 SLC26A4O43511 780 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 NCLP19338 710 aaKnown RBP19.65■□□□□ 0.74
COL7A1-205ENST00000465238 RARRES1P49788 294 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 KCNT2Q6UVM3 1135 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 LRRC55Q6ZSA7 311 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 RASSF8Q8NHQ8 419 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 MRPS27Q92552 414 aaKnown RBP19.65■□□□□ 0.74
COL7A1-205ENST00000465238 CALML4Q96GE6 196 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 ZNF558Q96NG5 402 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 NT5C3AQ9H0P0 336 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 DHX33Q9H6R0 707 aaKnown RBP19.65■□□□□ 0.74
COL7A1-205ENST00000465238 CHST12Q9NRB3 414 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 BARX2Q9UMQ3 279 aaPredicted RBP19.65■□□□□ 0.74
COL7A1-205ENST00000465238 MUC6Q6W4X9 2439 aa19.65■□□□□ 0.74
COL7A1-205ENST00000465238 ARHGEF35A5YM69 484 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 FSCN2O14926 492 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 PER2O15055 1255 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 PPP6R2O75170 966 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 DGAT1O75907 488 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 DDIT3P35638 169 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 DRP2Q13474 957 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 DUSP6Q16828 381 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 ZNF410Q86VK4 478 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 KCTD17Q8N5Z5 321 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 RNF169Q8NCN4 708 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 KCNG4Q8TDN1 519 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 CLIC6Q96NY7 704 aa19.64■□□□□ 0.73
COL7A1-205ENST00000465238 INO80BQ9C086 356 aaPredicted RBP19.64■□□□□ 0.73
COL7A1-205ENST00000465238 BMP2KQ9NSY1 1161 aaPredicted RBP19.64■□□□□ 0.73
COL7A1-205ENST00000465238 SUCLA2Q9P2R7 463 aaPredicted RBP19.64■□□□□ 0.73
COL7A1-205ENST00000465238 RBM19Q9Y4C8 960 aaKnown RBP19.64■□□□□ 0.73
COL7A1-205ENST00000465238 TCHHQ07283 1943 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 GAS2O43903 313 aaKnown RBP19.63■□□□□ 0.73
COL7A1-205ENST00000465238 FGFR4P22455 802 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 SFPQP23246 707 aaKnown RBP eCLIP19.63■□□□□ 0.73
COL7A1-205ENST00000465238 TXLNAP40222 546 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 KRT85P78386 507 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 KRT17Q04695 432 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 EMC2Q15006 297 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 HERC4Q5GLZ8 1057 aaPredicted RBP19.63■□□□□ 0.73
COL7A1-205ENST00000465238 CLLU1OSQ5K130 101 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 HYIQ5T013 277 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 ZNF598Q86UK7 904 aaKnown RBP19.63■□□□□ 0.73
COL7A1-205ENST00000465238 TCP11Q8WWU5 503 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 RSPH1Q8WYR4 309 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 PNMA5Q96PV4 448 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 PLIN2Q99541 437 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 MTRQ99707 1265 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 TRAIPQ9BWF2 469 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 MRPL9Q9BYD2 267 aaKnown RBP19.63■□□□□ 0.73
COL7A1-205ENST00000465238 NGRNQ9NPE2 291 aaKnown RBP19.63■□□□□ 0.73
COL7A1-205ENST00000465238 SPG21Q9NZD8 308 aa19.63■□□□□ 0.73
COL7A1-205ENST00000465238 A0A087WZ62 844 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 E9PMD0 336 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 USO1O60763 962 aaKnown RBP19.62■□□□□ 0.73
COL7A1-205ENST00000465238 CSDE1O75534 798 aaKnown RBP19.62■□□□□ 0.73
COL7A1-205ENST00000465238 SRGAP2BP0DMP2 458 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 SPECC1Q5M775 1068 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 RNF135Q8IUD6 432 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 TMEM143Q96AN5 459 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 EPSTI1Q96J88 318 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 TCF25Q9BQ70 676 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 FDXACB1Q9BRP7 624 aaPredicted RBP19.62■□□□□ 0.73
COL7A1-205ENST00000465238 CCSER1Q9C0I3 900 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 BHMT2Q9H2M3 363 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms