RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 NAALADL2Q58DX5 795 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 RRAGBQ5VZM2 374 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 MAEAQ7L5Y9 396 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 GPBP1Q86WP2 473 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 HACE1Q8IYU2 909 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 LRRC43Q8N309 656 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 SLC17A8Q8NDX2 589 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 CDX2Q99626 313 aaPredicted RBP13.09□□□□□ -0.31
VPS52-213ENST00000461743 PLVAPQ9BX97 442 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 MAGEF1Q9HAY2 307 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 UBN1Q9NPG3 1134 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 ARHGAP28Q9P2N2 729 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 ZDHHC9Q9Y397 364 aa13.09□□□□□ -0.31
VPS52-213ENST00000461743 ACKR2O00590 384 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 ARHGEF15O94989 841 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 PRKCBP05771 671 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 PLS3P13797 630 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 FOSL2P15408 326 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 ATF7P17544 494 aaPredicted RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 ARF4P18085 180 aaPredicted RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 POU3F3P20264 500 aaPredicted RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 DDIT3P35638 169 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 STAT6P42226 847 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 NPTX2P47972 431 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 SMTNP53814 917 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 DNM1Q05193 864 aaKnown RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 CSPP1Q1MSJ5 1256 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 AXDND1Q5T1B0 1012 aaPredicted RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 SLC27A1Q6PCB7 646 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 USP49Q70CQ1 688 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 APBB1IPQ7Z5R6 666 aaPredicted RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 ABI1Q8IZP0 508 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 FBXO22Q8NEZ5 403 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 LRRC15Q8TF66 581 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 P2RX5Q93086 422 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 FAM161BQ96MY7 647 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 PLIN2Q99541 437 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 NTPCRQ9BSD7 190 aaKnown RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 SCAND2PQ9GZW5 306 aaPredicted RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 TMEM134Q9H6X4 195 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 KMT5AQ9NQR1 393 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 LMCD1Q9NZU5 365 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 TFIP11Q9UBB9 837 aaKnown RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 RCOR1Q9UKL0 485 aa13.08□□□□□ -0.32
VPS52-213ENST00000461743 CIZ1Q9ULV3 898 aaPredicted RBP13.08□□□□□ -0.32
VPS52-213ENST00000461743 BRWD1Q9NSI6 2320 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 A0A1B0GUA9 196 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 TBCAO75347 108 aaKnown RBP13.07□□□□□ -0.32
VPS52-213ENST00000461743 LINC00271P0C7V0 271 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 NCLP19338 710 aaKnown RBP13.07□□□□□ -0.32
VPS52-213ENST00000461743 ANP32AP39687 249 aaKnown RBP13.07□□□□□ -0.32
VPS52-213ENST00000461743 ME1P48163 572 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 PEX3P56589 373 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 PRPF4BQ13523 1007 aaKnown RBP13.07□□□□□ -0.32
VPS52-213ENST00000461743 MCM6Q14566 821 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 DCAF4L1Q3SXM0 396 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 EPC2Q52LR7 807 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 ARSHQ5FYA8 562 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 SPECC1Q5M775 1068 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 UBXN11Q5T124 520 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 SV2BQ7L1I2 683 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 MRPL10Q7Z7H8 261 aaKnown RBP13.07□□□□□ -0.32
VPS52-213ENST00000461743 TMEM192Q8IY95 271 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 ARNTL2Q8WYA1 636 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 SPATA32Q96LK8 384 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 REEP2Q9BRK0 252 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 ADPGKQ9BRR6 497 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 C11orf84Q9BUA3 381 aaPredicted RBP13.07□□□□□ -0.32
VPS52-213ENST00000461743 LRRC27Q9C0I9 530 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 TNMDQ9H2S6 317 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 PRDM12Q9H4Q4 367 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 PARVGQ9HBI0 331 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 AAASQ9NRG9 546 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 RNF19AQ9NV58 838 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 FAM13BQ9NYF5 915 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 PCDHB2Q9Y5E7 798 aa13.07□□□□□ -0.32
VPS52-213ENST00000461743 PRUNE2Q8WUY3 3088 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 CCDC169A6NNP5 214 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 TBKBP1A7MCY6 615 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 INPPL1O15357 1258 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 GTPBP6O43824 516 aaPredicted RBP13.06□□□□□ -0.32
VPS52-213ENST00000461743 FAM13AO94988 1023 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 KRT18P05783 430 aaKnown RBP13.06□□□□□ -0.32
VPS52-213ENST00000461743 LAG3P18627 525 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 CTNNB1P35222 781 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 NCKAP1LP55160 1127 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 E2F4Q16254 413 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 CLLU1OSQ5K130 101 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 RESP18Q5W5W9 173 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 GLB1LQ6UWU2 654 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 MYLIPQ8WY64 445 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 CASD1Q96PB1 797 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 C17orf80Q9BSJ5 609 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 TRIM6Q9C030 488 aaPredicted RBP13.06□□□□□ -0.32
VPS52-213ENST00000461743 LMAN2LQ9H0V9 348 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 SEL1LQ9UBV2 794 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 PCDHA7Q9UN72 937 aa13.06□□□□□ -0.32
VPS52-213ENST00000461743 MRPL42Q9Y6G3 142 aaKnown RBP13.06□□□□□ -0.32
VPS52-213ENST00000461743 EPOPA6NHQ4 379 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 H3BNC9 293 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms