RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ECEL1O95672 775 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ATF2P15336 505 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 BPIFB4P59827 614 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 KRT76Q01546 638 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 MAIP1Q8WWC4 291 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 SYN2Q92777 582 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 GBA2Q9HCG7 927 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 INTS9Q9NV88 658 aaKnown RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ODF2LQ9ULJ1 636 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 GOLGA8SH3BPF8 625 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ATMINO43313 823 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ACSL3O95573 720 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ATP5DP30049 168 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 JAK3P52333 1124 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 RWDD2BP57060 319 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 FAM47CQ5HY64 1035 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 KRT39Q6A163 491 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 CCDC91Q7Z6B0 441 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ZBTB8OSQ8IWT0 167 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 NRBP2Q9NSY0 501 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 TBK1Q9UHD2 729 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ZNF541Q9H0D2 1346 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 KCNMA1Q12791 1236 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 KCTD19Q17RG1 926 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 MIS18BP1Q6P0N0 1132 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 MOXD1Q6UVY6 613 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 CDAN1Q8IWY9 1227 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 USP38Q8NB14 1042 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 SLC17A8Q8NDX2 589 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 ZNF564Q8TBZ8 553 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 NUP85Q9BW27 656 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 RAB20Q9NX57 234 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 PNMA2Q9UL42 364 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 HMGB1P1B2RPK0 211 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 FOXN3O00409 490 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 TRIM66O15016 1216 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 RPS6P62753 249 aaKnown RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 IRX5P78411 483 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 LACTBP83111 547 aaPredicted RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 GABPAQ06546 454 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 CROCCP2Q86T23 111 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 CDHR1Q96JP9 859 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 PPP1R16BQ96T49 567 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 C11orf70Q9BRQ4 267 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 HOMER3Q9NSC5 361 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 NFIBO00712 420 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 WNT10BO00744 389 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 CSPG5O95196 566 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 STX2P32856 288 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 MAGOHP61326 146 aaKnown RBP12.5□□□□□ -0.41
NPHP4-204ENST00000460696 EPC2Q52LR7 807 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 SCARA5Q6ZMJ2 495 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 CREG2Q8IUH2 290 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 TAAR1Q96RJ0 339 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 CBWD1Q9BRT8 395 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 MSTO1Q9BUK6 570 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 OSGEPQ9NPF4 335 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 NOD1Q9Y239 953 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 PCDHA10Q9Y5I2 948 aa12.5□□□□□ -0.41
NPHP4-204ENST00000460696 GLI1P08151 1106 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 ZBTB16Q05516 673 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 NSUN6Q8TEA1 469 aaKnown RBP12.49□□□□□ -0.41
NPHP4-204ENST00000460696 TMX2Q9Y320 296 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 CEP290O15078 2479 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 ASTN2O75129 1339 aaPredicted RBP12.49□□□□□ -0.41
NPHP4-204ENST00000460696 SPDYE2BA6NHP3 402 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 MIF4GDA9UHW6 222 aaKnown RBP12.49□□□□□ -0.41
NPHP4-204ENST00000460696 SPDYE6P0CI01 402 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 HSPA6P17066 643 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 SLC12A3P55017 1021 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 PPP2R5AQ15172 486 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 TMEM270Q6UE05 265 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 GPC2Q8N158 579 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 IKZF4Q9H2S9 585 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 FAM169AQ9Y6X4 670 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 GLTPD2A6NH11 291 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 SLITRK3O94933 977 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 FBXL13Q8NEE6 735 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 MCPH1Q8NEM0 835 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 TPCN2Q8NHX9 752 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 ARL8AQ96BM9 186 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 IDI2Q9BXS1 227 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 PRDM4Q9UKN5 801 aa12.49□□□□□ -0.41
NPHP4-204ENST00000460696 SYNGAP1Q96PV0 1343 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 TMEM150BA6NC51 233 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 POC1B-GALNT4F8VUJ3 575 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 DYNLT1P63172 113 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ZKSCAN8Q15776 578 aaPredicted RBP12.48□□□□□ -0.41
NPHP4-204ENST00000460696 Q4G0T1 1027 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 THNSL1Q8IYQ7 743 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 SLC35C1Q96A29 364 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 RIT2Q99578 217 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 THAP2Q9H0W7 228 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ADAM22Q9P0K1 906 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ZNF263O14978 683 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 EIF3DO15371 548 aaKnown RBP eCLIP12.48□□□□□ -0.41
NPHP4-204ENST00000460696 PRLRP16471 622 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 CAP2P40123 477 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ACOT2P49753 483 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 AMPD2Q01433 879 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms