RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 RBM10P98175 930 aaKnown RBP20.54■□□□□ 0.88
HOXD3-204ENST00000459979 KRT79Q5XKE5 535 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 PADI6Q6TGC4 694 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 EFHBQ8N7U6 833 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 ASAP3Q8TDY4 903 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 SNX29Q8TEQ0 813 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 RSPH1Q8WYR4 309 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 PPP2R3CQ969Q6 453 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 MMTAG2Q9BU76 263 aaKnown RBP20.54■□□□□ 0.88
HOXD3-204ENST00000459979 TMEM117Q9H0C3 514 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 RNF19AQ9NV58 838 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 KIAA1024Q9UPX6 916 aa20.54■□□□□ 0.88
HOXD3-204ENST00000459979 USO1O60763 962 aaKnown RBP20.53■□□□□ 0.88
HOXD3-204ENST00000459979 HOXA11P31270 313 aaPredicted RBP20.53■□□□□ 0.88
HOXD3-204ENST00000459979 CAPSQ13938 189 aa20.53■□□□□ 0.88
HOXD3-204ENST00000459979 FBXL18Q96ME1 805 aa20.53■□□□□ 0.88
HOXD3-204ENST00000459979 PIN4Q9Y237 131 aaKnown RBP20.53■□□□□ 0.88
HOXD3-204ENST00000459979 VPS37CA5D8V6 355 aaPredicted RBP20.52■□□□□ 0.88
HOXD3-204ENST00000459979 ARHGEF35A5YM69 484 aa20.52■□□□□ 0.88
HOXD3-204ENST00000459979 PER2O15055 1255 aa20.52■□□□□ 0.88
HOXD3-204ENST00000459979 FGFR1P11362 822 aa20.52■□□□□ 0.88
HOXD3-204ENST00000459979 ATF7P17544 494 aaPredicted RBP20.52■□□□□ 0.88
HOXD3-204ENST00000459979 RAB27AP51159 221 aa20.52■□□□□ 0.88
HOXD3-204ENST00000459979 HERC4Q5GLZ8 1057 aaPredicted RBP20.52■□□□□ 0.88
HOXD3-204ENST00000459979 HYIQ5T013 277 aa20.52■□□□□ 0.88
HOXD3-204ENST00000459979 SMRP1Q8NCR6 262 aa20.52■□□□□ 0.88
HOXD3-204ENST00000459979 CASD1Q96PB1 797 aa20.52■□□□□ 0.88
HOXD3-204ENST00000459979 POLR3FQ9H1D9 316 aaPredicted RBP20.52■□□□□ 0.88
HOXD3-204ENST00000459979 DDX19AQ9NUU7 478 aaKnown RBP20.52■□□□□ 0.88
HOXD3-204ENST00000459979 PP2D1A8MPX8 630 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 SLC26A4O43511 780 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 EYA4O95677 639 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 AXLP30530 894 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 TWF2Q6IBS0 349 aaKnown RBP20.51■□□□□ 0.87
HOXD3-204ENST00000459979 MICAL1Q8TDZ2 1067 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 AK8Q96MA6 479 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 BHMT2Q9H2M3 363 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 TLE6Q9H808 572 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 GPRC5CQ9NQ84 441 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 FAM105AQ9NUU6 356 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 DNM3Q9UQ16 869 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 PCDHB12Q9Y5F1 795 aa20.51■□□□□ 0.87
HOXD3-204ENST00000459979 VWA3AA6NCI4 1184 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 CDC25AP30304 524 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 ERVFC1P60507 584 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 NHLH1Q02575 133 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 MBTD1Q05BQ5 628 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 COASYQ13057 564 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 RESTQ13127 1097 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 COLGALT1Q8NBJ5 622 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 VN1R2Q8NFZ6 395 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 CCDC51Q96ER9 411 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 CWH43Q9H720 699 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 AAASQ9NRG9 546 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 TYW1Q9NV66 732 aaKnown RBP20.5■□□□□ 0.87
HOXD3-204ENST00000459979 MTMR6Q9Y217 621 aa20.5■□□□□ 0.87
HOXD3-204ENST00000459979 USP15Q9Y4E8 981 aaPredicted RBP20.5■□□□□ 0.87
HOXD3-204ENST00000459979 TSPAN1O60635 241 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 FGF18O76093 207 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 PDIA4P13667 645 aaKnown RBP20.49■□□□□ 0.87
HOXD3-204ENST00000459979 SF3A1Q15459 793 aaKnown RBP20.49■□□□□ 0.87
HOXD3-204ENST00000459979 AMHR2Q16671 573 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 CLLU1OSQ5K130 101 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 UBXN11Q5T124 520 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 CDCA2Q69YH5 1023 aaPredicted RBP20.49■□□□□ 0.87
HOXD3-204ENST00000459979 MRPL10Q7Z7H8 261 aaKnown RBP20.49■□□□□ 0.87
HOXD3-204ENST00000459979 THNSL1Q8IYQ7 743 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 ABI1Q8IZP0 508 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 NT5C3AQ9H0P0 336 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 TLR9Q9NR96 1032 aa20.49■□□□□ 0.87
HOXD3-204ENST00000459979 E9PMD0 336 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 INO80B-WBP1J3KQ70 363 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 STX6O43752 255 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 ERLIN2O94905 339 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 NCBP1Q09161 790 aaKnown RBP20.48■□□□□ 0.87
HOXD3-204ENST00000459979 PPP4R3CPQ6ZMV5 832 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 LRRC55Q6ZSA7 311 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 MAEAQ7L5Y9 396 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 HSCBQ8IWL3 235 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 LRRC43Q8N309 656 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 CNNM3Q8NE01 707 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 EDAQ92838 391 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 KIFAP3Q92845 792 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 PGBD4Q96DM1 585 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 PNMA5Q96PV4 448 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 ZSCAN16Q9H4T2 348 aaPredicted RBP20.48■□□□□ 0.87
HOXD3-204ENST00000459979 PCDHB2Q9Y5E7 798 aa20.48■□□□□ 0.87
HOXD3-204ENST00000459979 MORC2Q9Y6X9 1032 aaPredicted RBP20.48■□□□□ 0.87
HOXD3-204ENST00000459979 LOC730098B7Z3J9 87 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 LAG3P18627 525 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 LONP1P36776 959 aaKnown RBP20.47■□□□□ 0.87
HOXD3-204ENST00000459979 NAMPTP43490 491 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 MRE11P49959 708 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 PPP2R5AQ15172 486 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 PTPAQ15257 358 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 FAM187BQ17R55 369 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 PLPP4Q5VZY2 271 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 NOTUMQ6P988 496 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 KCNK18Q7Z418 384 aa20.47■□□□□ 0.87
HOXD3-204ENST00000459979 RNF169Q8NCN4 708 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms