RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CCDC113Q9H0I3 377 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 TRPV6Q9H1D0 765 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 GRPEL1Q9HAV7 217 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 PRDM10Q9NQV6 1147 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 PCDH10Q9P2E7 1040 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 TBX20Q9UMR3 447 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 NFE2L3Q9Y4A8 694 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 KBTBD13C9JR72 458 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 PSMA7O14818 248 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 EIF3DO15371 548 aaKnown RBP eCLIP12.07□□□□□ -0.48
SCN9A-205ENST00000454569 B4GALT5O43286 388 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 GAS2O43903 313 aaKnown RBP12.07□□□□□ -0.48
SCN9A-205ENST00000454569 B4GALT4O60513 344 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 DNM2P50570 870 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 CDK7P50613 346 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 MYL5Q02045 173 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 MXD4Q14582 209 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-205ENST00000454569 PTGISQ16647 500 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 CDCA2Q69YH5 1023 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-205ENST00000454569 SERINC5Q86VE9 423 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 DEPTORQ8TB45 409 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 ZBTB45Q96K62 511 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-205ENST00000454569 JPH2Q9BR39 696 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-205ENST00000454569 SENP6Q9GZR1 1112 aaPredicted RBP12.07□□□□□ -0.48
SCN9A-205ENST00000454569 STARD7Q9NQZ5 370 aa12.07□□□□□ -0.48
SCN9A-205ENST00000454569 IKBKBO14920 756 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 CABYRO75952 493 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 ADSSP30520 456 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 GJA8P48165 433 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 CASP4P49662 377 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 SMTNP53814 917 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 PTENP60484 403 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 MBTD1Q05BQ5 628 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 AMHR2Q16671 573 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 TRIM71Q2Q1W2 868 aaKnown RBP12.06□□□□□ -0.48
SCN9A-205ENST00000454569 SPATA1Q5VX52 437 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 LRRC55Q6ZSA7 311 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 CDR2LQ86X02 465 aaPredicted RBP12.06□□□□□ -0.48
SCN9A-205ENST00000454569 EXOC8Q8IYI6 725 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 OSMRQ99650 979 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 SRRTQ9BXP5 876 aaKnown RBP12.06□□□□□ -0.48
SCN9A-205ENST00000454569 NAT10Q9H0A0 1025 aaKnown RBP12.06□□□□□ -0.48
SCN9A-205ENST00000454569 DACH1Q9UI36 760 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 TRAF3IP3Q9Y228 551 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 GINS2Q9Y248 185 aa12.06□□□□□ -0.48
SCN9A-205ENST00000454569 K7ERI5 159 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 ARVCFO00192 962 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 ASAP2O43150 1006 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 CHRNA1P02708 482 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 COL6A1P12109 1028 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 ZNF18P17022 549 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 TMOD1P28289 359 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 STIM1Q13586 685 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 PPP2R5AQ15172 486 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 CT47A1Q5JQC4 288 aaPredicted RBP12.05□□□□□ -0.48
SCN9A-205ENST00000454569 CDKAL1Q5VV42 579 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 MAP4K3Q8IVH8 894 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 ACCSQ96QU6 501 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 CBWD1Q9BRT8 395 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 TARS2Q9BW92 718 aaKnown RBP12.05□□□□□ -0.48
SCN9A-205ENST00000454569 FZD8Q9H461 694 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 PCIF1Q9H4Z3 704 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 AGPAT3Q9NRZ7 376 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 TYW1Q9NV66 732 aaKnown RBP12.05□□□□□ -0.48
SCN9A-205ENST00000454569 A0A0U1RQG5 324 aaPredicted RBP12.05□□□□□ -0.48
SCN9A-205ENST00000454569 GRXCR2A6NFK2 248 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 PDXKO00764 312 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 CTSHP09668 335 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 GNAT1P11488 350 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 MGAT3Q09327 533 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 PTPN21Q16825 1174 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 EEF1DP3Q658K8 133 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 APTXQ7Z2E3 356 aaKnown RBP12.05□□□□□ -0.48
SCN9A-205ENST00000454569 ZC3H3Q8IXZ2 948 aaKnown RBP12.05□□□□□ -0.48
SCN9A-205ENST00000454569 CSGALNACT2Q8N6G5 542 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 NLRP7Q8WX94 980 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 KCNN1Q92952 543 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 PAWRQ96IZ0 340 aaKnown RBP12.05□□□□□ -0.48
SCN9A-205ENST00000454569 DCBLD2Q96PD2 775 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 MAP7D2Q96T17 732 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 TMEM134Q9H6X4 195 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 DMAC2Q9NW81 257 aa12.05□□□□□ -0.48
SCN9A-205ENST00000454569 CITO14578 2027 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 UBE4BO95155 1302 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 SMTNL1A8MU46 457 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 BECN2A8MW95 431 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 INO80B-WBP1J3KQ70 363 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 ABLIM1O14639 778 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 CAVIN2O95810 425 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 NR3C1P04150 777 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 PRKCBP05771 671 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 EN2P19622 333 aaPredicted RBP12.04□□□□□ -0.48
SCN9A-205ENST00000454569 TRAF7Q6Q0C0 670 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 SLC39A5Q6ZMH5 540 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 FAM126BQ8IXS8 530 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 SYCP3Q8IZU3 236 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 SLC39A7Q92504 469 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 CPB2Q96IY4 423 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 GTPBP4Q9BZE4 634 aaKnown RBP12.04□□□□□ -0.48
SCN9A-205ENST00000454569 INO80BQ9C086 356 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms