RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 CTNNB1P35222 781 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 STAT6P42226 847 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 NPTX2P47972 431 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 KRT85P78386 507 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 PCBP1Q15365 356 aaKnown RBP eCLIP20.59■□□□□ 0.89
SHH-204ENST00000441114 MAPK6Q16659 721 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 TPRNQ4KMQ1 711 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 UBXN11Q5T124 520 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 CCDC73Q6ZRK6 1079 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 TMEM192Q8IY95 271 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 ABI1Q8IZP0 508 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 FBXO22Q8NEZ5 403 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 HELQQ8TDG4 1101 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 GDPD5Q8WTR4 605 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 REEP2Q9BRK0 252 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 ZHX3Q9H4I2 956 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 RNF19AQ9NV58 838 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 KCND2Q9NZV8 630 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 STK17AQ9UEE5 414 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 RCOR1Q9UKL0 485 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 ATP6V1DQ9Y5K8 247 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 TTLL13PA6NNM8 815 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 K7ERI5 159 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 SLC16A4O15374 487 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 HOXA2O43364 376 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 RAB27AP51159 221 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 PRPF4BQ13523 1007 aaKnown RBP20.58■□□□□ 0.89
SHH-204ENST00000441114 ADGRE1Q14246 886 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 EPC2Q52LR7 807 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 AXDND1Q5T1B0 1012 aaPredicted RBP20.58■□□□□ 0.89
SHH-204ENST00000441114 SHC4Q6S5L8 630 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 ZNF598Q86UK7 904 aaKnown RBP20.58■□□□□ 0.89
SHH-204ENST00000441114 SPATA32Q96LK8 384 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 TRAIPQ9BWF2 469 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 EIF2AQ9BY44 585 aaKnown RBP20.58■□□□□ 0.89
SHH-204ENST00000441114 FZD8Q9H461 694 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 HCSTQ9UBK5 93 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 STXBP5LQ9Y2K9 1186 aa20.58■□□□□ 0.89
SHH-204ENST00000441114 MEIS3P2A8K0S8 358 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 FAM13AO94988 1023 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 NPTXRO95502 500 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 PLS3P13797 630 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 EFNA5P52803 228 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 NUCB2P80303 420 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 GIT2Q14161 759 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 NAALADL2Q58DX5 795 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 CLLU1OSQ5K130 101 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 PPP4R3CPQ6ZMV5 832 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 SV2BQ7L1I2 683 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 DYMQ7RTS9 669 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 PGBD4Q96DM1 585 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 SAMD11Q96NU1 681 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 CASD1Q96PB1 797 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 APOL6Q9BWW8 343 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 TRIM6Q9C030 488 aaPredicted RBP20.57■□□□□ 0.88
SHH-204ENST00000441114 TMEM117Q9H0C3 514 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 CCDC113Q9H0I3 377 aa20.57■□□□□ 0.88
SHH-204ENST00000441114 ACKR2O00590 384 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 ZNF623O75123 536 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 EDN1P05305 212 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 ANP32AP39687 249 aaKnown RBP20.56■□□□□ 0.88
SHH-204ENST00000441114 FAM187BQ17R55 369 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 MICALL1Q8N3F8 863 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 MYCT1Q8N699 235 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 LEO1Q8WVC0 666 aaPredicted RBP20.56■□□□□ 0.88
SHH-204ENST00000441114 PPM1EQ8WY54 764 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 DHX58Q96C10 678 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 CCDC51Q96ER9 411 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 PRIMPOLQ96LW4 560 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 C17orf75Q9HAS0 396 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 TYW1Q9NV66 732 aaKnown RBP20.56■□□□□ 0.88
SHH-204ENST00000441114 ODF2LQ9ULJ1 636 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 INPP5FQ9Y2H2 1132 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 HES2Q9Y543 173 aa20.56■□□□□ 0.88
SHH-204ENST00000441114 CNTNAP2Q9UHC6 1331 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 TBCAO75347 108 aaKnown RBP20.55■□□□□ 0.88
SHH-204ENST00000441114 LINC00271P0C7V0 271 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 ITGA4P13612 1032 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 BMPR1AP36894 532 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 SMTNP53814 917 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 GPM6BQ13491 265 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 SLC27A1Q6PCB7 646 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 SMG8Q8ND04 991 aaKnown RBP20.55■□□□□ 0.88
SHH-204ENST00000441114 STAMQ92783 540 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 FAM13BQ9NYF5 915 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 LARSQ9P2J5 1176 aaKnown RBP20.55■□□□□ 0.88
SHH-204ENST00000441114 RBM19Q9Y4C8 960 aaKnown RBP20.55■□□□□ 0.88
SHH-204ENST00000441114 IPPQ9Y573 584 aa20.55■□□□□ 0.88
SHH-204ENST00000441114 PHLPP2Q6ZVD8 1323 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 CHD9Q3L8U1 2897 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 A0A1B0GUA9 196 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 MYMKA6NI61 221 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 N4BP3O15049 544 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 CCDC85BQ15834 202 aaPredicted RBP20.54■□□□□ 0.88
SHH-204ENST00000441114 NT5DC1Q5TFE4 455 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 GLB1LQ6UWU2 654 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 AGMOQ6ZNB7 445 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 LRRC55Q6ZSA7 311 aa20.54■□□□□ 0.88
SHH-204ENST00000441114 MRPL10Q7Z7H8 261 aaKnown RBP20.54■□□□□ 0.88
SHH-204ENST00000441114 CNNM3Q8NE01 707 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms