RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.25□□□□□ -0.93
HPS4-206ENST00000439453 TULP1O00294 542 aaPredicted RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 CYTH3O43739 400 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 VIMP08670 466 aaKnown RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 TXKP42681 527 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 KCNJ2P63252 427 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 ICA1Q05084 483 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 KIAA1755Q5JYT7 1200 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 CAPRIN2Q6IMN6 1127 aaKnown RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 ZNF571Q7Z3V5 609 aaPredicted RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 NEK8Q86SG6 692 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 DNAAF5Q86Y56 855 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 ATP8B4Q8TF62 1192 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 SPATS2LQ9NUQ6 558 aaKnown RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 INTS9Q9NV88 658 aaKnown RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 DOCK3Q8IZD9 2030 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 A0A1W2PRG0 241 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 EME2A4GXA9 379 aaPredicted RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 SMNDC1O75940 238 aaKnown RBP eCLIP9.25□□□□□ -0.93
HPS4-206ENST00000439453 GH2P01242 217 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 HOXA7P31268 230 aaPredicted RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 ALDH5A1P51649 535 aaPredicted RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 NCALDP61601 193 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 BIRC2Q13490 618 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 SH3D19Q5HYK7 790 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 DDX12PQ92771 950 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 PGM2Q96G03 612 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 PRMT1Q99873 361 aaKnown RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 WDR18Q9BV38 432 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 EPB41L4BQ9H329 900 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 KANSL2Q9H9L4 492 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 SAGE1Q9NXZ1 904 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 SUCLA2Q9P2R7 463 aaPredicted RBP9.25□□□□□ -0.93
HPS4-206ENST00000439453 STXBP5LQ9Y2K9 1186 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 TLDC2A0PJX2 215 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 MANSC4A6NHS7 340 aaPredicted RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 BTBD19C9JJ37 291 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 UBOX5O94941 541 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 NUDT17P0C025 328 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 CCND1P24385 295 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 BRD2P25440 801 aaKnown RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 POU5F1Q01860 360 aaKnown RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 MAP2K1Q02750 393 aaPredicted RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 MIS18BP1Q6P0N0 1132 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 TRIM59Q8IWR1 403 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 RAD54LQ92698 747 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 SAAL1Q96ER3 474 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 ZMYND12Q9H0C1 365 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 NSRP1Q9H0G5 558 aaKnown RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 AZI2Q9H6S1 392 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 ZHX2Q9Y6X8 837 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 CCDC169A6NNP5 214 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 RARAP10276 462 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 CDC25CP30307 473 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 PEX19P40855 299 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 IRF2BP2Q7Z5L9 587 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 SLFN11Q7Z7L1 901 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 MICAL1Q8TDZ2 1067 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 CEP63Q96MT8 703 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 RAB17Q9H0T7 212 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 CCDC134Q9H6E4 229 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 ECT2Q9H8V3 914 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 GOPCQ9HD26 462 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 IL17RBQ9NRM6 502 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 SLC5A4Q9NY91 659 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 NAGPAQ9UK23 515 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 MTMR7Q9Y216 660 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 GNA14O95837 355 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 PMS2P54278 862 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 NAPAP54920 295 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 INHBEP58166 350 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 IFI35P80217 286 aaPredicted RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 TFAP4Q01664 338 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 CERKLQ49MI3 558 aaPredicted RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 TREML2Q5T2D2 321 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 DENND2CQ68D51 928 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 ALKBH5Q6P6C2 394 aaKnown RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 DAAM2Q86T65 1068 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 DGKHQ86XP1 1220 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 NEK9Q8TD19 979 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 PABPC3Q9H361 631 aaKnown RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 LCTP09848 1927 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 SMIM23A6NLE4 172 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 RGS16O15492 202 aaPredicted RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 NOVP48745 357 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 GTF2A2P52657 109 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 SEPT2Q15019 361 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 ACER1Q8TDN7 264 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 PRCCQ92733 491 aaPredicted RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 SH3GL3Q99963 347 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 GINM1Q9NU53 330 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 ZDHHC18Q9NUE0 388 aa9.24□□□□□ -0.93
HPS4-206ENST00000439453 CORO1CQ9ULV4 474 aaPredicted RBP9.24□□□□□ -0.93
HPS4-206ENST00000439453 MKI67P46013 3256 aaKnown RBP9.23□□□□□ -0.93
HPS4-206ENST00000439453 SMCHD1A6NHR9 2005 aa9.23□□□□□ -0.93
HPS4-206ENST00000439453 CCL15-CCL14A0A0B4J2E2 113 aa9.23□□□□□ -0.93
HPS4-206ENST00000439453 CXCL11O14625 94 aa9.23□□□□□ -0.93
HPS4-206ENST00000439453 COASYQ13057 564 aa9.23□□□□□ -0.93
HPS4-206ENST00000439453 CCL15Q16663 113 aa9.23□□□□□ -0.93
HPS4-206ENST00000439453 NT5DC3Q86UY8 548 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms