RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 H7C0C1 242 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 PTCD1O75127 700 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 ATP5OP48047 213 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 DLG4P78352 724 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 VPS50Q96JG6 964 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 DNAJC5BQ9UF47 199 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 POC1B-GALNT4F8VUJ3 575 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 MBD4O95243 580 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 FDX1P10109 184 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ITGA9Q13797 1035 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 MAPK6Q16659 721 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ULK2Q8IYT8 1036 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TBC1D19Q8N5T2 526 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 STAMQ92783 540 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 AMNQ9BXJ7 453 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 FTOQ9C0B1 505 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS53-204ENST00000437048 SERTAD1Q9UHV2 236 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 CLCN2P51788 898 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 SNAP25P60880 206 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TRAPPC11Q7Z392 1133 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ZNF677Q86XU0 584 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 SVOPQ8N4V2 548 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 FAM89AQ96GI7 184 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TSSK1BQ9BXA7 367 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 COG4Q9H9E3 785 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 NLRC4Q9NPP4 1024 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 CAPN1P07384 714 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 RHOT1Q8IXI2 618 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ELAC2Q9BQ52 826 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 ASCC2Q9H1I8 757 aaPredicted RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 URB1O60287 2271 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 MED26O95402 600 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 PEX5P50542 639 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 MAGOHP61326 146 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 CDC42EP1Q00587 391 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 DPH5Q9H2P9 285 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 NRBP2Q9NSY0 501 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 BAZ2BQ9UIF8 2168 aaKnown RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 SAGE2PA6NJ88 616 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 EVPLLA8MZ36 301 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 TM9SF1O15321 606 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 ZBED4O75132 1171 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 NPR1P16066 1061 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PDE6AP16499 860 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 CENPCQ03188 943 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 COG2Q14746 738 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 FAM167AQ96KS9 214 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 TESK2Q96S53 571 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 UBAP1Q9NZ09 502 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PRPF3O43395 683 aaKnown RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 GADD45BO75293 160 aaPredicted RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 PPM1FP49593 454 aaPredicted RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 CLK1P49759 484 aaKnown RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 TMEM35BQ8NCS4 154 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 VCPKMTQ9H867 229 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PMLP29590 882 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 RAD23AP54725 363 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 IFRD2Q12894 506 aaPredicted RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 COL23A1Q86Y22 540 aaPredicted RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 SAR1AQ9NR31 198 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 ADD3Q9UEY8 706 aaKnown RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 PRDM15P57071 1507 aaPredicted RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 TRIM24O15164 1050 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 FGGP02679 453 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 CALB2P22676 271 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 JAK3P52333 1124 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PICK1Q9NRD5 415 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PLS3P13797 630 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 ABCB4P21439 1286 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 ATICP31939 592 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 ACADVLP49748 655 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 MYL6P60660 151 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 OLR1P78380 273 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 DCAF15Q66K64 600 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 THOC7Q6I9Y2 204 aaKnown RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 SETD9Q8NE22 299 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 ATP6V1E2Q96A05 226 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 MS4A14Q96JA4 679 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 KCND1Q9NSA2 647 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 SNX12Q9UMY4 172 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 STX11O75558 287 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 NCF2P19878 526 aaPredicted RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 GRK2P25098 689 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 DNAAF3Q8N9W5 541 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 SLC10A4Q96EP9 437 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 VTI1BQ9UEU0 232 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 ATP6V1HQ9UI12 483 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 BIRC5O15392 142 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 MXI1P50539 228 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 DEPDC1Q5TB30 811 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 FRMD5Q7Z6J6 570 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PLEKHA5Q9HAU0 1116 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 SASH1O94885 1247 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 DNAJB2P25686 324 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 TXKP42681 527 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 C1DQ13901 141 aaKnown RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 PSTPIP2Q9H939 334 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PCDHA4Q9UN74 947 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PXDNLA1KZ92 1463 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 SUPT3HO75486 399 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms