RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 LAMB3Q13751 1172 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 FMR1NBQ8N0W7 255 aaPredicted RBP13.59□□□□□ -0.23
LDB3-205ENST00000429277 OR9Q1Q8NGQ5 310 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 BTBD6Q96KE9 485 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 PPP1R2P1Q96PQ5 205 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 PARVAQ9NVD7 372 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 CD2BP2O95400 341 aaKnown RBP13.59□□□□□ -0.23
LDB3-205ENST00000429277 GPSM2P81274 684 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 ANGPTL8Q6UXH0 198 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 TRMT10CQ7L0Y3 403 aaKnown RBP13.59□□□□□ -0.23
LDB3-205ENST00000429277 SNF8Q96H20 258 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 PPP1R16BQ96T49 567 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 MMP19Q99542 508 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 POLR3FQ9H1D9 316 aaPredicted RBP13.59□□□□□ -0.23
LDB3-205ENST00000429277 SP110Q9HB58 689 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 WDR35Q9P2L0 1181 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 GABBR1Q9UBS5 961 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 PCDHA10Q9Y5I2 948 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 HECW2Q9P2P5 1572 aa13.59□□□□□ -0.23
LDB3-205ENST00000429277 A0A0G2JND7 137 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 E5RI56 91 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 E9PMD0 336 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 STXBP3O00186 592 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 PDXKO00764 312 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 BNIP3LO60238 219 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 HAUS5O94927 633 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 RAB42Q8N4Z0 105 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 EXT2Q93063 718 aa13.58□□□□□ -0.23
LDB3-205ENST00000429277 MAP3K20Q9NYL2 800 aaKnown RBP13.58□□□□□ -0.23
LDB3-205ENST00000429277 SCHIP1Q9P0W5 487 aaPredicted RBP13.58□□□□□ -0.23
LDB3-205ENST00000429277 USP17L15C9J2P7 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L13C9JLJ4 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L11C9JVI0 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L18D6R9N7 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L22D6RA61 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L17D6RBQ6 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L19D6RCP7 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L20D6RJB6 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 F5H6K3 240 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 EYA4O95677 639 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 KLRC3Q07444 240 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 USP17L24Q0WX57 530 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 DRAP1Q14919 205 aaPredicted RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 LLGL1Q15334 1064 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 TRADDQ15628 312 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 SP8Q8IXZ3 490 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 ELAC2Q9BQ52 826 aaKnown RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 PPCSQ9HAB8 311 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 CHCHD3Q9NX63 227 aaKnown RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 SLC9A2Q9UBY0 812 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 HEY1Q9Y5J3 304 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 PNMA6AP0CW24 399 aaPredicted RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 DMTNQ08495 405 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 TRIM28Q13263 835 aaKnown RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 TRIM59Q8IWR1 403 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 VPS11Q9H270 941 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 TDRD3Q9H7E2 651 aaKnown RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 GTSE1Q9NYZ3 720 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 ZFP69BQ9UJL9 534 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 G3BP2Q9UN86 482 aaKnown RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 SNX5Q9Y5X3 404 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 CPDO75976 1380 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 NEMP1O14524 444 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 TRAPPC3O43617 180 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 CCDC22O60826 627 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 SCP2P22307 547 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 PRAMEP78395 509 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 OCA2Q04671 838 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 E2F5Q15329 346 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 QRICH1Q2TAL8 776 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 ZNF394Q53GI3 561 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 KCND2Q9NZV8 630 aa13.58□□□□□ -0.24
LDB3-205ENST00000429277 PRDM15P57071 1507 aaPredicted RBP13.58□□□□□ -0.24
LDB3-205ENST00000429277 IGKV5-2P06315 115 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 SERPINB4P48594 390 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 ASIC4Q96FT7 647 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 LXNQ9BS40 222 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 YY1AP1Q9H869 796 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 INPP5FQ9Y2H2 1132 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 POTEB3A0JP26 581 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 POTECB2RU33 542 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 EIF3DO15371 548 aaKnown RBP eCLIP13.57□□□□□ -0.24
LDB3-205ENST00000429277 AARSP49588 968 aaKnown RBP eCLIP13.57□□□□□ -0.24
LDB3-205ENST00000429277 ATP2C1P98194 919 aaPredicted RBP13.57□□□□□ -0.24
LDB3-205ENST00000429277 USP17L6PQ6QN14 398 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 POTEBQ6S5H4 581 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 PIP4K2CQ8TBX8 421 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 GTF3C2Q8WUA4 911 aaPredicted RBP13.57□□□□□ -0.24
LDB3-205ENST00000429277 ALKBH8Q96BT7 664 aaKnown RBP13.57□□□□□ -0.24
LDB3-205ENST00000429277 ISCA1Q9BUE6 129 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 RBAKQ9NYW8 714 aaPredicted RBP13.57□□□□□ -0.24
LDB3-205ENST00000429277 PEX19P40855 299 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 CDK17Q00537 523 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 NSUN2Q08J23 767 aaKnown RBP eCLIP13.57□□□□□ -0.24
LDB3-205ENST00000429277 EFTUD2Q15029 972 aaKnown RBP eCLIP13.57□□□□□ -0.24
LDB3-205ENST00000429277 HLFQ16534 295 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 TXNRD1Q16881 649 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 TSGA10IPQ3SY00 556 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 SWSAP1Q6NVH7 229 aa13.57□□□□□ -0.24
LDB3-205ENST00000429277 MTHFD1LQ6UB35 978 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms