RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 HOXA11P31270 313 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 CA8P35219 290 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 SAFBQ15424 915 aaKnown RBP eCLIP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 LONRF3Q496Y0 759 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 AGMOQ6ZNB7 445 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 MRPL10Q7Z7H8 261 aaKnown RBP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 TMEM173Q86WV6 379 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 IFNLR1Q8IU57 520 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 VPS52Q8N1B4 723 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 TMEM87AQ8NBN3 555 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 CNNM3Q8NE01 707 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 EDAQ92838 391 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 RPGRIP1Q96KN7 1286 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 NECTIN4Q96NY8 510 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 HSD17B14Q9BPX1 270 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 NRDE2Q9H7Z3 1164 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 TTC12Q9H892 705 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 XPNPEP1Q9NQW7 623 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 ANKEF1Q9NU02 776 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 DZANK1Q9NVP4 752 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 KANSL3Q9P2N6 904 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 TECTAO75443 2155 aa12.87□□□□□ -0.35
SQSTM1-203ENST00000422245 NCLP19338 710 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 AXLP30530 894 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 SLC11A1P49279 550 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 FOSBP53539 338 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 PTENP60484 403 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 ITIH3Q06033 890 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 POU5F1BQ06416 359 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 NCBP1Q09161 790 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 ST3GAL1Q11201 340 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 UBXN11Q5T124 520 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 CES5AQ6NT32 575 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 NOTUMQ6P988 496 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 HFE2Q6ZVN8 426 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 MFSD14AQ96MC6 490 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 MTMR9Q96QG7 549 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 TMEM175Q9BSA9 504 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 NFKBIZQ9BYH8 718 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 GBP3Q9H0R5 595 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 UBN1Q9NPG3 1134 aa12.86□□□□□ -0.35
SQSTM1-203ENST00000422245 ZBTB39O15060 712 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 INPPL1O15357 1258 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 TSPAN1O60635 241 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 CXCL14O95715 111 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 HOXD11P31277 338 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 TXKP42681 527 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 RARRES1P49788 294 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 ZXDAP98168 799 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 ORC2Q13416 577 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 CAPSQ13938 189 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 TRIM67Q6ZTA4 783 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 BMP8AQ7Z5Y6 402 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 ASAP3Q8TDY4 903 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 BCL7CQ8WUZ0 217 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 FAM193BQ96PV7 902 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 APOL5Q9BWW9 433 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 ADAM7Q9H2U9 754 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 DNAJB4Q9UDY4 337 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 LIMCH1Q9UPQ0 1083 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 NR2E1Q9Y466 385 aa12.85□□□□□ -0.35
SQSTM1-203ENST00000422245 POTEMA6NI47 508 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 INO80B-WBP1J3KQ70 363 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 WNT7AO00755 349 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 B4GALT3O60512 393 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 XRCC6P12956 609 aaKnown RBP eCLIP12.84□□□□□ -0.351e-5■■■□□ 14.9
SQSTM1-203ENST00000422245 ITGA4P13612 1032 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 ARL2P36404 184 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 MTHFRP42898 656 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 MBTD1Q05BQ5 628 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 PTPN14Q15678 1187 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 PTPN21Q16825 1174 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 PPFIBP1Q86W92 1011 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 ZNF280BQ86YH2 543 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 HACE1Q8IYU2 909 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 SMG8Q8ND04 991 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 AUTS2Q8WXX7 1259 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 C8orf76Q96K31 380 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 RIPOR3Q96MK2 946 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 LLPHQ9BRT6 129 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 VN1R3Q9BXE9 311 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 EMILIN2Q9BXX0 1053 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 POLR3FQ9H1D9 316 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 IPPQ9Y573 584 aa12.84□□□□□ -0.35
SQSTM1-203ENST00000422245 ZMYM2Q9UBW7 1377 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 TMEM221A6NGB7 291 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 M0R296 226 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 USO1O60763 962 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 GLRA2P23416 452 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 MCM7P33993 719 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 HMGN5P82970 282 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 SIGLEC14Q08ET2 396 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 AMHR2Q16671 573 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 CCDC83Q8IWF9 413 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 MCPH1Q8NEM0 835 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 ERMNQ8TAM6 284 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 EIF2AQ9BY44 585 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 TRIM6Q9C030 488 aaPredicted RBP12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 CSRNP2Q9H175 543 aa12.83□□□□□ -0.36
SQSTM1-203ENST00000422245 TMEM60Q9H2L4 133 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms