RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 A0A1B0GVL5 298 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 TTLL13PA6NNM8 815 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 STAG3L1P0CL83 205 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 ATF7P17544 494 aaPredicted RBP13.76□□□□□ -0.21
SKA1-203ENST00000417656 ARF4P18085 180 aaPredicted RBP13.76□□□□□ -0.21
SKA1-203ENST00000417656 CMA1P23946 247 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 ZNF131P52739 623 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 PCBP1Q15365 356 aaKnown RBP eCLIP13.76□□□□□ -0.21
SKA1-203ENST00000417656 MAPK6Q16659 721 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 FAM43BQ6ZT52 329 aaPredicted RBP13.76□□□□□ -0.21
SKA1-203ENST00000417656 Q7L0L9 218 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 SPRED2Q7Z698 418 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 CDR2LQ86X02 465 aaPredicted RBP13.76□□□□□ -0.21
SKA1-203ENST00000417656 ECHDC2Q86YB7 292 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 FSIP1Q8NA03 581 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 IQUBQ8NA54 791 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 DDX12PQ92771 950 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 RAD9AQ99638 391 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 TTYH1Q9H313 450 aaPredicted RBP13.76□□□□□ -0.21
SKA1-203ENST00000417656 FZD8Q9H461 694 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 CUEDC2Q9H467 287 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 GOLPH3LQ9H4A5 285 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 C17orf75Q9HAS0 396 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 PARVGQ9HBI0 331 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 FAM105AQ9NUU6 356 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 TMEM161AQ9NX61 479 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 KCNH3Q9ULD8 1083 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 USP20Q9Y2K6 914 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 PCDHB7Q9Y5E2 793 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 RALGAPA2Q2PPJ7 1873 aa13.76□□□□□ -0.21
SKA1-203ENST00000417656 A0A0U1RQF3 1178 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 A0A1W2PQ27 194 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 A0A1W2PQ64 194 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 A0A1W2PQD8 194 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 K7ENM7 598 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 DGKIO75912 1065 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 FGFR1P11362 822 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 RAB27AP51159 221 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 EFNA5P52803 228 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 FAM189BP81408 668 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 PRPF4BQ13523 1007 aaKnown RBP13.75□□□□□ -0.21
SKA1-203ENST00000417656 FAM187BQ17R55 369 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 TMEM132AQ24JP5 1023 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 PAN2Q504Q3 1202 aaKnown RBP13.75□□□□□ -0.21
SKA1-203ENST00000417656 UBXN11Q5T124 520 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 NOTUMQ6P988 496 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 TAS1R3Q7RTX0 852 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 SFR1Q86XK3 245 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 MYCT1Q8N699 235 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 SPIRE2Q8WWL2 714 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 MRPS27Q92552 414 aaKnown RBP13.75□□□□□ -0.21
SKA1-203ENST00000417656 CCDC51Q96ER9 411 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 PRIMPOLQ96LW4 560 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 FAM161BQ96MY7 647 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 IPO9Q96P70 1041 aaKnown RBP13.75□□□□□ -0.21
SKA1-203ENST00000417656 EIF2AQ9BY44 585 aaKnown RBP13.75□□□□□ -0.21
SKA1-203ENST00000417656 TNMDQ9H2S6 317 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 SLC28A3Q9HAS3 691 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 RNF19AQ9NV58 838 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 LARSQ9P2J5 1176 aaKnown RBP13.75□□□□□ -0.21
SKA1-203ENST00000417656 HPSEQ9Y251 543 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 INSL6Q9Y581 213 aa13.75□□□□□ -0.21
SKA1-203ENST00000417656 TMEM265A0A087WTH1 108 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.74□□□□□ -0.21
SKA1-203ENST00000417656 LINC01553A4QN01 128 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 ACTN4O43707 911 aaKnown RBP13.74□□□□□ -0.21
SKA1-203ENST00000417656 MAPTP10636 758 aaKnown RBP13.74□□□□□ -0.21
SKA1-203ENST00000417656 AXLP30530 894 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 NDUFA8P51970 172 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 NCKAP1LP55160 1127 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 TAP1Q03518 808 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 LONRF3Q496Y0 759 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 GPR153Q6NV75 609 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 ZNF598Q86UK7 904 aaKnown RBP13.74□□□□□ -0.21
SKA1-203ENST00000417656 GRAMD1CQ8IYS0 662 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 TMEM161BQ8NDZ6 487 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 LPPQ93052 612 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 ZNF689Q96CS4 500 aaPredicted RBP13.74□□□□□ -0.21
SKA1-203ENST00000417656 DNAJC19Q96DA6 116 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 DCBLD2Q96PD2 775 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 PYM1Q9BRP8 204 aaKnown RBP13.74□□□□□ -0.21
SKA1-203ENST00000417656 TRAIPQ9BWF2 469 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 PDZD7Q9H5P4 517 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 ZNF576Q9H609 170 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 ELAC1Q9H777 363 aaKnown RBP13.74□□□□□ -0.21
SKA1-203ENST00000417656 MAGEF1Q9HAY2 307 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 KBTBD4Q9NVX7 518 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 SERTAD1Q9UHV2 236 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 PCDHB2Q9Y5E7 798 aa13.74□□□□□ -0.21
SKA1-203ENST00000417656 CHD9Q3L8U1 2897 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 FAM237AA0A1B0GTK4 181 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 TBKBP1A7MCY6 615 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 MEIS3P2A8K0S8 358 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 K7ERI5 159 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 ACKR2O00590 384 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 N4BP3O15049 544 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 NPTXRO95502 500 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 IDEP14735 1019 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 CASP1P29466 404 aa13.73□□□□□ -0.21
SKA1-203ENST00000417656 SMTNP53814 917 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms