RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PKN2Q16513 984 aaKnown RBP13.64□□□□□ -0.23
COL6A3-206ENST00000409809 ARMCX5Q6P1M9 558 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 TRIM13O60858 407 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 KRT19P08727 400 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SCTRP47872 440 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 CTTNQ14247 550 aaKnown RBP13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SGSM1Q2NKQ1 1148 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 CIDEBQ9UHD4 219 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 PDZK1P1A8MUH7 402 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 MED26O95402 600 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 COPAP53621 1224 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 TRPC4APQ8TEL6 797 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 TNKSO95271 1327 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SNX2O60749 519 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 LCA5LO95447 670 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 POLR2EP19388 210 aaKnown RBP13.64□□□□□ -0.23
COL6A3-206ENST00000409809 MTHFD1LQ6UB35 978 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SFR1Q86XK3 245 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SKA2Q8WVK7 121 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-206ENST00000409809 PDIA3P30101 505 aaKnown RBP13.64□□□□□ -0.23
COL6A3-206ENST00000409809 TALDO1P37837 337 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 ITPRIPL1Q6GPH6 555 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 ACCSQ96QU6 501 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 ZBTB21Q9ULJ3 1066 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SOX13Q9UN79 622 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 WDR64B1ANS9 1081 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 CFAP99D6REC4 459 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 PSMD14O00487 310 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 MCUQ8NE86 351 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SCFD1Q8WVM8 642 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 BHMT2Q9H2M3 363 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 TRABDQ9H4I3 376 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 CENPXA8MT69 81 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 VWA5AO00534 786 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 MMP1P03956 469 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 PROCA1Q8NCQ7 364 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-206ENST00000409809 STKLD1Q8NE28 680 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 PIGOQ8TEQ8 1089 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 M0QZ92 97 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 CYTH3O43739 400 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 ITGA1P56199 1179 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 C4orf22Q6V702 233 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 MICU2Q8IYU8 434 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 ANKRD36BP1Q96IX9 119 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 YTHDC2Q9H6S0 1430 aaKnown RBP13.63□□□□□ -0.23
COL6A3-206ENST00000409809 GPC5P78333 572 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 BBS9Q3SYG4 887 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 MICALL2Q8IY33 904 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 SERPINB12Q96P63 405 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 CEP44Q9C0F1 390 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 RPL26L1Q9UNX3 145 aaKnown RBP13.63□□□□□ -0.23
COL6A3-206ENST00000409809 WDR91A4D1P6 747 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 MTRF1O75570 445 aaKnown RBP13.63□□□□□ -0.23
COL6A3-206ENST00000409809 CHN1P15882 459 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 BFSP2Q13515 415 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 SNX17Q15036 470 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 RCN1Q15293 331 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 SPDYE1Q8NFV5 336 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-206ENST00000409809 SLC39A2Q9NP94 309 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 FBXO28Q9NVF7 368 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 PLEKHG2Q9H7P9 1386 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 ALOX5P09917 674 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 KRT20P35900 424 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 Q4G0T1 1027 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 SCYL2Q6P3W7 929 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 NANOGNBQ7Z5D8 188 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 ERP27Q96DN0 273 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 MRPL48Q96GC5 212 aaKnown RBP13.63□□□□□ -0.23
COL6A3-206ENST00000409809 ITIH2P19823 946 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 GPTP24298 496 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 TPH2Q8IWU9 490 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 PIGUQ9H490 435 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 PSTPIP2Q9H939 334 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 FBXL5Q9UKA1 691 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 ATP10BO94823 1461 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 FAM95CA0A1B0GW59 222 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 FSBPO95073 299 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 GPATCH4Q5T3I0 446 aaKnown RBP13.63□□□□□ -0.23
COL6A3-206ENST00000409809 IRGCQ6NXR0 463 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 OLFML1Q6UWY5 402 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 NDUFAF2Q8N183 169 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 TSPAN17Q96FV3 270 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 TRIM62Q9BVG3 475 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 C15orf41Q9Y2V0 281 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 MYH7P12883 1935 aa13.63□□□□□ -0.23
COL6A3-206ENST00000409809 AKAP10O43572 662 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PSMC6P62333 389 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 BBS7Q8IWZ6 715 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 FAM9CQ8IZT9 166 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 CLEC4FQ8N1N0 589 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 NR1H4Q96RI1 486 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PCDHA4Q9UN74 947 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 KCNJ14Q9UNX9 436 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 SNAP25P60880 206 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 DCAF5Q96JK2 942 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 ZFYVE19Q96K21 471 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 SMIM31A0A1B0GVY4 71 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 GUCY1B2O75343 617 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 BCL10O95999 233 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 TFDP1Q14186 410 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms