RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ABCB4P21439 1286 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 HMGB2P26583 209 aaKnown RBP10.77□□□□□ -0.68
COL17A1-203ENST00000393211 ATP5DP30049 168 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 CRKP46108 304 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 PEX5P50542 639 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 PTPROQ16827 1216 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 CBWD6Q4V339 395 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 CBWD3Q5JTY5 395 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 CBWD5Q5RIA9 395 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 LRCH2Q5VUJ6 765 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 TPH2Q8IWU9 490 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 PRELID2Q8N945 189 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 PROCA1Q8NCQ7 364 aaPredicted RBP10.77□□□□□ -0.68
COL17A1-203ENST00000393211 FBXO25Q8TCJ0 367 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 ALG3Q92685 438 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 ART4Q93070 314 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 DYDC2Q96IM9 177 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 UIMC1Q96RL1 719 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 PLCD4Q9BRC7 762 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 PLVAPQ9BX97 442 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 TRIM31Q9BZY9 425 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 ADAM7Q9H2U9 754 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 TMEM206Q9H813 350 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 GOPCQ9HD26 462 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 ERVK-5Q9HDB9 667 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 INTS9Q9NV88 658 aaKnown RBP10.77□□□□□ -0.68
COL17A1-203ENST00000393211 RGL1Q9NZL6 768 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 SAMD15Q9P1V8 674 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 CTTNBP2NLQ9P2B4 639 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 COG5Q9UP83 839 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 SNX24Q9Y343 169 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 PASKQ96RG2 1323 aa10.77□□□□□ -0.69
COL17A1-203ENST00000393211 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 FOXN3O00409 490 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 OPLAHO14841 1288 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 EXOC3O60645 756 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 NDUFB10O96000 172 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 FTLP02792 175 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SHBGP04278 402 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 EZRP15311 586 aaKnown RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 RPL21P46778 160 aaKnown RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SLC29A2Q14542 456 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 ZC2HC1CQ53FD0 456 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 ODR4Q5SWX8 454 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 PHLDB3Q6NSJ2 640 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 CRELD2Q6UXH1 353 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SYDE1Q6ZW31 735 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 GBP7Q8N8V2 638 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 GIMAP7Q8NHV1 300 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 MAIP1Q8WWC4 291 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 GLG1Q92896 1179 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 CD101Q93033 1021 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 CXorf56Q9H5V9 222 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 HOMER3Q9NSC5 361 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 MCM8Q9UJA3 840 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SLC12A4Q9UP95 1085 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 COL2A1P02458 1487 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 RBBP6Q7Z6E9 1792 aaKnown RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SFI1A8K8P3 1242 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 RASGRF2O14827 1237 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 RIMBP2O15034 1052 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 RIPK2O43353 540 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 MAN1A1P33908 653 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 COILP38432 576 aaPredicted RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 PDE6CP51160 858 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SCNN1DP51172 638 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 CYP2J2P51589 502 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 PDE4CQ08493 712 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 NFIAQ12857 509 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 ABCB5Q2M3G0 1257 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 USH1GQ495M9 461 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 EPC2Q52LR7 807 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 MSL1Q68DK7 614 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 CCDC137Q6PK04 289 aaKnown RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 PODNQ7Z5L7 613 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SYCP3Q8IZU3 236 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 MDM1Q8TC05 714 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 CCHCR1Q8TD31 782 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 PIGOQ8TEQ8 1089 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SERPINB12Q96P63 405 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SELENOSQ9BQE4 189 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 AZI2Q9H6S1 392 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 LRRC19Q9H756 370 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 CD248Q9HCU0 757 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 SEPT11Q9NVA2 429 aaKnown RBP10.76□□□□□ -0.69
COL17A1-203ENST00000393211 HAUS2Q9NVX0 235 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 TAS2R14Q9NYV8 317 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 WHRNQ9P202 907 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 UVRAGQ9P2Y5 699 aa10.76□□□□□ -0.69
COL17A1-203ENST00000393211 A0A1B0GUA9 196 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 RAD21O60216 631 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 GAS7O60861 476 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 CYP1A2P05177 515 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 TRIM49P0CI25 452 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 TRIM49CP0CI26 452 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 VAMP7P51809 220 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 CAV1Q03135 178 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 LMNB2Q03252 620 aa10.75□□□□□ -0.69
COL17A1-203ENST00000393211 IKQ13123 557 aaPredicted RBP10.75□□□□□ -0.69
COL17A1-203ENST00000393211 ZNF211Q13398 564 aaPredicted RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms