RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 THAP3Q8WTV1 239 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 DCAF4Q8WV16 495 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 C8orf76Q96K31 380 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 LZTS2Q9BRK4 669 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 SPZ1Q9BXG8 430 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 RNF26Q9BY78 433 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 RIOX1Q9H6W3 641 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 VCPKMTQ9H867 229 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 JMJD4Q9H9V9 463 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 SSU72Q9NP77 194 aaKnown RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 SYNPO2Q9UMS6 1093 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 ZHX2Q9Y6X8 837 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 VPS37CA5D8V6 355 aaPredicted RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 PPP1R11O60927 126 aaPredicted RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 DEXIO95424 95 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 SMARCA1P28370 1054 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 SLC1A4P43007 532 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 SNAP25P60880 206 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 RESTQ13127 1097 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 LRRC41Q15345 812 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 PFKFB3Q16875 520 aaPredicted RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 CCDC96Q2M329 555 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 FAM83BQ5T0W9 1011 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 KRT40Q6A162 431 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 FAM173BQ6P4H8 233 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 BTNL9Q6UXG8 535 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 GK5Q6ZS86 529 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 C12orf40Q86WS4 652 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 ADGRF4Q8IZF3 695 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 UBR7Q8N806 425 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 MTMR8Q96EF0 704 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 PIGSQ96S52 555 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 LRRC3Q9BY71 257 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 KIAA1683Q9H0B3 1180 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 GSX1Q9H4S2 264 aaPredicted RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 BRMS1Q9HCU9 246 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 KCNJ14Q9UNX9 436 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 AFG3L2Q9Y4W6 797 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 OAS3Q9Y6K5 1087 aaKnown RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 WDR33Q9C0J8 1336 aaKnown RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 PAPPA2Q9BXP8 1791 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 PHIPQ8WWQ0 1821 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 DOCK1Q14185 1865 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 MYH6P13533 1939 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 KIAA1324LA8MWY0 1029 aaPredicted RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 KIF28PB7ZC32 967 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 TMEM232C9JQI7 657 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 SCG2P13521 617 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 FOSL1P15407 271 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 SPINK2P20155 84 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 GP2P55259 537 aaKnown RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 ZNF252P-AS1Q0IIN9 211 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 NPY5RQ15761 445 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 PPM1JQ5JR12 505 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 GPATCH4Q5T3I0 446 aaKnown RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 CST9Q5W186 159 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 WWC2Q6AWC2 1192 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 C6orf15Q6UXA7 325 aaPredicted RBP4.06□□□□□ -1.76
MCF2-202ENST00000370573 SEZ6L2Q6UXD5 910 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 CLEC17AQ6ZS10 378 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 DDX42Q86XP3 938 aaKnown RBP eCLIP4.06□□□□□ -1.76
MCF2-202ENST00000370573 FERD3LQ96RJ6 166 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 ATXN3LQ9H3M9 355 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 PICK1Q9NRD5 415 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 KRT82Q9NSB4 513 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 FBXO28Q9NVF7 368 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 VPS54Q9P1Q0 977 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 ZMYM5Q9UJ78 669 aa4.06□□□□□ -1.76
MCF2-202ENST00000370573 OTOFQ9HC10 1997 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 A0A087X0B3 334 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 TRIM75PA6NK02 468 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 H3BQV1 296 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 STXBP3O00186 592 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 BAG4O95429 457 aaKnown RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 FAM87AP0C7U9 286 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 NF2P35240 595 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 HMGCS2P54868 508 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 BACE1P56817 501 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 AKAP17AQ02040 695 aaKnown RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 KIF23Q02241 960 aaPredicted RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 PTPN11Q06124 597 aaPredicted RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 TCEA2Q15560 299 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 ZC3H12AQ5D1E8 599 aaKnown RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 SYDE2Q5VT97 1194 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 DTX1Q86Y01 620 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 GATAD2BQ8WXI9 593 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 WASF1Q92558 559 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 RRP36Q96EU6 259 aaKnown RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 PHF20Q9BVI0 1012 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 EMILIN2Q9BXX0 1053 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 CEP44Q9C0F1 390 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 SH2D4AQ9H788 454 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 PCDHA4Q9UN74 947 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 KIF3AQ9Y496 699 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 BTBD18B2RXH4 712 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 ZBTB5O15062 677 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 PLA2G6O60733 806 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 LEFTY1O75610 366 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 CELF2O95319 508 aaKnown RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 WNT11O96014 354 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms