RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 MEIS3P2A8K0S8 358 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 SLC16A4O15374 487 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 POLR2DO15514 142 aaKnown RBP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 PRKCBP05771 671 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 KRT18P05783 430 aaKnown RBP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 STAG3L1P0CL83 205 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 LONRF3Q496Y0 759 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 PAN2Q504Q3 1202 aaKnown RBP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 ADALQ6DHV7 355 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 PPP4R3CPQ6ZMV5 832 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 SV2BQ7L1I2 683 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 ZNF598Q86UK7 904 aaKnown RBP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 RNF169Q8NCN4 708 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 TRAIPQ9BWF2 469 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 EIF2AQ9BY44 585 aaKnown RBP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 CERS4Q9HA82 394 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 FAM105AQ9NUU6 356 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 PRMT7Q9NVM4 692 aaPredicted RBP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 ARHGAP28Q9P2N2 729 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 RALGAPA2Q2PPJ7 1873 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 CNTNAP2Q9UHC6 1331 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 ZNF131P52739 623 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 PCBP1Q15365 356 aaKnown RBP eCLIP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 FAM187BQ17R55 369 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 DDX12PQ92771 950 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 LPPQ93052 612 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 DNAJC19Q96DA6 116 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 ELAC1Q9H777 363 aaKnown RBP16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 C17orf75Q9HAS0 396 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 FAM13BQ9NYF5 915 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 PHLPP2Q6ZVD8 1323 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 A0A1B0GVL5 298 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 FAM13AO94988 1023 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 PFKFB1P16118 471 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 AXLP30530 894 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 GRIN2CQ14957 1233 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 MAPK6Q16659 721 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 NOTUMQ6P988 496 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 SPIRE2Q8WWL2 714 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 PRIMPOLQ96LW4 560 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 ZHX3Q9H4I2 956 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 HCSTQ9UBK5 93 aa16.62■□□□□ 0.25
SMPDL3A-201ENST00000368440 EPOPA6NHQ4 379 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 LINC00271P0C7V0 271 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 CMA1P23946 247 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 EFNA5P52803 228 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 CLLU1OSQ5K130 101 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 TMEM161BQ8NDZ6 487 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 GUCD1Q96NT3 240 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 NTPCRQ9BSD7 190 aaKnown RBP16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 C17orf80Q9BSJ5 609 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 MTMR10Q9NXD2 777 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 MTUS1Q9ULD2 1270 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 KCNH3Q9ULD8 1083 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 PCDHB2Q9Y5E7 798 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 K7ERI5 159 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 ACKR2O00590 384 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 TBCAO75347 108 aaKnown RBP16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 NCKAP1LP55160 1127 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 PRPF4BQ13523 1007 aaKnown RBP16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 BTG3Q14201 252 aaPredicted RBP16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 NT5DC1Q5TFE4 455 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 EEF1DP3Q658K8 133 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 MYCT1Q8N699 235 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 IQUBQ8NA54 791 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 SMG8Q8ND04 991 aaKnown RBP16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 FIZ1Q96SL8 496 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 GOLPH3LQ9H4A5 285 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 PDZD7Q9H5P4 517 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 PARVGQ9HBI0 331 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 KBTBD4Q9NVX7 518 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 LARSQ9P2J5 1176 aaKnown RBP16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 HPSEQ9Y251 543 aa16.61■□□□□ 0.25
SMPDL3A-201ENST00000368440 TRANK1O15050 2925 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 A0A1B0GUA9 196 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 TBKBP1A7MCY6 615 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 ZNF623O75123 536 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 NPTXRO95502 500 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 MAPTP10636 758 aaKnown RBP16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 RAB27AP51159 221 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 SFR1Q86XK3 245 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 CMTR2Q8IYT2 770 aaKnown RBP16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 FIBCD1Q8N539 461 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 HELQQ8TDG4 1101 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 CASD1Q96PB1 797 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 ANP32EQ9BTT0 268 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 TNMDQ9H2S6 317 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 CUEDC2Q9H467 287 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 PRDM12Q9H4Q4 367 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 TMEM134Q9H6X4 195 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 SERTAD1Q9UHV2 236 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 HES2Q9Y543 173 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 IPPQ9Y573 584 aa16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 MRPL42Q9Y6G3 142 aaKnown RBP16.6■□□□□ 0.25
SMPDL3A-201ENST00000368440 RFXAPO00287 272 aa16.59■□□□□ 0.25
SMPDL3A-201ENST00000368440 EOMESO95936 686 aa16.59■□□□□ 0.25
SMPDL3A-201ENST00000368440 CASP1P29466 404 aa16.59■□□□□ 0.25
SMPDL3A-201ENST00000368440 NDUFA8P51970 172 aa16.59■□□□□ 0.25
SMPDL3A-201ENST00000368440 NCBP1Q09161 790 aaKnown RBP16.59■□□□□ 0.25
SMPDL3A-201ENST00000368440 SLC27A1Q6PCB7 646 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms