RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TFDP1Q14186 410 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 CCSAPQ6IQ19 270 aaPredicted RBP20.36■□□□□ 0.85
CLN3-206ENST00000360019 FAM186BQ8IYM0 893 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 KIAA0319LQ8IZA0 1049 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 BICD1Q96G01 975 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 C2orf40Q9H1Z8 148 aa20.36■□□□□ 0.85
CLN3-206ENST00000360019 CST5P28325 142 aaPredicted RBP20.35■□□□□ 0.85
CLN3-206ENST00000360019 HOXC8P31273 242 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 PTENP60484 403 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 TBX2Q13207 712 aaPredicted RBP20.35■□□□□ 0.85
CLN3-206ENST00000360019 ARID5BQ14865 1188 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 ZBTB8OSQ8IWT0 167 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 IFT122Q9HBG6 1241 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 METTL14Q9HCE5 456 aaKnown RBP20.35■□□□□ 0.85
CLN3-206ENST00000360019 HDAC6Q9UBN7 1215 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 FRMD4BQ9Y2L6 1034 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.35■□□□□ 0.85
CLN3-206ENST00000360019 ITIH6Q6UXX5 1313 aa20.35■□□□□ 0.85
CLN3-206ENST00000360019 A0A1W2PQC6 194 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 TTLL13PA6NNM8 815 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 ZEB2O60315 1214 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 MSCO60682 206 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 LIG4P49917 911 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 HS1BP3Q53T59 392 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 XXYLT1Q8NBI6 393 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 PPP1R16BQ96T49 567 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 NFKBIZQ9BYH8 718 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 A0A087WZ62 844 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 ASGR1P07306 291 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 ZNF200P98182 395 aaPredicted RBP20.34■□□□□ 0.85
CLN3-206ENST00000360019 POU5F1BQ06416 359 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 KCNA10Q16322 511 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 RUFY4Q6ZNE9 571 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 C7orf31Q8N865 590 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 RDH13Q8NBN7 331 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 ZNF830Q96NB3 372 aaPredicted RBP20.34■□□□□ 0.85
CLN3-206ENST00000360019 MAP7D2Q96T17 732 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 FDXACB1Q9BRP7 624 aaPredicted RBP20.34■□□□□ 0.85
CLN3-206ENST00000360019 TARS2Q9BW92 718 aaKnown RBP20.34■□□□□ 0.85
CLN3-206ENST00000360019 MINDY3Q9H8M7 445 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 STYXL1Q9Y6J8 313 aa20.34■□□□□ 0.85
CLN3-206ENST00000360019 C17orf102A2RUQ5 167 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 TREHO43280 583 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 MYCNP04198 464 aaPredicted RBP20.33■□□□□ 0.85
CLN3-206ENST00000360019 GARTP22102 1010 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 MBTD1Q05BQ5 628 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 CCDC155Q8N6L0 562 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 POMGNT1Q8WZA1 660 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 SAAL1Q96ER3 474 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 HAPLN2Q9GZV7 340 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 FZD8Q9H461 694 aa20.33■□□□□ 0.85
CLN3-206ENST00000360019 SMIM35A0A1B0GVV1 85 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 GOLGA8IPA6NC78 632 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 GOLGA8JA6NMD2 632 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 INO80B-WBP1J3KQ70 363 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 PRKCBP05771 671 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 IQCF3P0C7M6 154 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 CYP2C9P11712 490 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 GPC3P51654 580 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 MAPK6Q16659 721 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 NBPF20Q3BBV1 942 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 DCAF17Q5H9S7 520 aaPredicted RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 FKBP15Q5T1M5 1219 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 LHX8Q68G74 356 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 IFNLR1Q8IU57 520 aaPredicted RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 DNAJC5GQ8N7S2 189 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 SH3TC2Q8TF17 1288 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 SLC35C1Q96A29 364 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 ERGIC2Q96RQ1 377 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 INO80BQ9C086 356 aaPredicted RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 FAM49AQ9H0Q0 323 aaPredicted RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 KCNF1Q9H3M0 494 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 HMX1Q9NP08 348 aaPredicted RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 TRIP12Q14669 1992 aaPredicted RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 PHKA2P46019 1235 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 KLK7P49862 253 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 GSDMDP57764 484 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 KCNH2Q12809 1159 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 SYCP1Q15431 976 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 ZPBP2Q6X784 338 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 CBWD2Q8IUF1 395 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 CACTINQ8WUQ7 758 aaKnown RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 ZBTB45Q96K62 511 aaPredicted RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 FBXL18Q96ME1 805 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 MRPL4Q9BYD3 311 aaKnown RBP20.32■□□□□ 0.84
CLN3-206ENST00000360019 PTPN22Q9Y2R2 807 aa20.32■□□□□ 0.84
CLN3-206ENST00000360019 ADRB2P07550 413 aa20.31■□□□□ 0.84
CLN3-206ENST00000360019 NLRP11P59045 1033 aaKnown RBP20.31■□□□□ 0.84
CLN3-206ENST00000360019 PPP2R3AQ06190 1150 aa20.31■□□□□ 0.84
CLN3-206ENST00000360019 GOLGA8FQ08AF8 430 aa20.31■□□□□ 0.84
CLN3-206ENST00000360019 GOLGA8DPQ0D2H9 430 aa20.31■□□□□ 0.84
CLN3-206ENST00000360019 NLRP7Q8WX94 980 aa20.31■□□□□ 0.84
CLN3-206ENST00000360019 GTF2IRD1Q9UHL9 959 aa20.31■□□□□ 0.84
CLN3-206ENST00000360019 ACKR2O00590 384 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 MAPK13O15264 365 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 B4GALT5O43286 388 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 CSDE1O75534 798 aaKnown RBP20.3■□□□□ 0.84
CLN3-206ENST00000360019 AFPP02771 609 aaKnown RBP20.3■□□□□ 0.84
CLN3-206ENST00000360019 GYPCP04921 128 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 TMEM62Q0P6H9 643 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms