RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 HACL1Q9UJ83 578 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 AMFRQ9UKV5 643 aa16.73■□□□□ 0.27
UPF3B-202ENST00000345865 DOCK5Q9H7D0 1870 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 ZNF233A6NK53 670 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 WDR64B1ANS9 1081 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 KRIT1O00522 736 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 HSF2BPO75031 334 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 MICALL2Q8IY33 904 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 MREGQ8N565 214 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 ZKSCAN4Q969J2 545 aaPredicted RBP16.72■□□□□ 0.27
UPF3B-202ENST00000345865 ISCUQ9H1K1 167 aa16.72■□□□□ 0.27
UPF3B-202ENST00000345865 ANKRD62A6NC57 917 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 ZNF862O60290 1169 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 ZBED4O75132 1171 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 RFX1P22670 979 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 PRAMEF18Q5VWM3 479 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 SEMA4DQ92854 862 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 SAAL1Q96ER3 474 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 NEUROG2Q9H2A3 272 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 TAF1DQ9H5J8 278 aaPredicted RBP16.71■□□□□ 0.27
UPF3B-202ENST00000345865 RNF146Q9NTX7 359 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 AMACRQ9UHK6 382 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 P4HA2O15460 535 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 SHOX2O60902 331 aaPredicted RBP16.71■□□□□ 0.27
UPF3B-202ENST00000345865 RGS20O76081 388 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 CCDC172P0C7W6 258 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 NPTX2P47972 431 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 JAK3P52333 1124 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 ZNF746Q6NUN9 644 aaPredicted RBP16.71■□□□□ 0.27
UPF3B-202ENST00000345865 VSIG10LQ86VR7 867 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 REPS2Q8NFH8 660 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 ELMO3Q96BJ8 720 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 KREMEN1Q96MU8 473 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 PCDHB18PQ96TA0 734 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 POP1Q99575 1024 aaKnown RBP16.71■□□□□ 0.27
UPF3B-202ENST00000345865 CHORDC1Q9UHD1 332 aaPredicted RBP16.71■□□□□ 0.27
UPF3B-202ENST00000345865 TBX20Q9UMR3 447 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 CTDP1Q9Y5B0 961 aaPredicted RBP16.71■□□□□ 0.27
UPF3B-202ENST00000345865 PFASO15067 1338 aa16.71■□□□□ 0.27
UPF3B-202ENST00000345865 CCDC169A6NNP5 214 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 GOLGA8KD6RF30 607 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 SGPL1O95470 568 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 GMPSP49915 693 aaPredicted RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 MXI1P50539 228 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 BACE1P56817 501 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 KRT76Q01546 638 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 MAP2K1Q02750 393 aaPredicted RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 DALRD3Q5D0E6 543 aaKnown RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 SLC39A4Q6P5W5 647 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 SAMD3Q8N6K7 520 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 CELF4Q9BZC1 486 aaKnown RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 ANKEF1Q9NU02 776 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 DAAM1Q9Y4D1 1078 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 MAPK13O15264 365 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 OPA1O60313 960 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 STBD1O95210 358 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 FGGP02679 453 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 FTLP02792 175 aaPredicted RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 NR3C2P08235 984 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 CHRNB2P17787 502 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 CNGA1P29973 690 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 SFNP31947 248 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 MCCD1P59942 119 aaPredicted RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 SNRNP35Q16560 246 aaKnown RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 RPUSD2Q8IZ73 545 aaKnown RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 SH2D3CQ8N5H7 860 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 WHAMMQ8TF30 809 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 ALG3Q92685 438 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 TIPINQ9BVW5 301 aa16.7■□□□□ 0.26
UPF3B-202ENST00000345865 MOV10L1Q9BXT6 1211 aaKnown RBP16.7■□□□□ 0.26
UPF3B-202ENST00000345865 DOCK1Q14185 1865 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 CCDC188H7C350 402 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 TULP1O00294 542 aaPredicted RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 POU5F1Q01860 360 aaKnown RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 CETN1Q12798 172 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 PPFIA1Q13136 1202 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 CFAP58Q5T655 872 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 NAA35Q5VZE5 725 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 KCTD16Q68DU8 428 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 NOP9Q86U38 636 aaKnown RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 FMNL3Q8IVF7 1028 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 MAP4K3Q8IVH8 894 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 EPS8L1Q8TE68 723 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 CCDC127Q96BQ5 260 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 TOPORSQ9NS56 1045 aaPredicted RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 GINM1Q9NU53 330 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 TTC7AQ9ULT0 858 aaPredicted RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 ADGRA3Q8IWK6 1321 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 DENND3A2RUS2 1198 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 TTI1O43156 1089 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 ZBTB7AO95365 584 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 FLT3P36888 993 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 USP8P40818 1118 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 TGFB2P61812 414 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 ZNF211Q13398 564 aaPredicted RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 HLTFQ14527 1009 aaKnown RBP eCLIP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 DNAJC21Q5F1R6 531 aaKnown RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 PARD3BQ8TEW8 1205 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 SLC16A10Q8TF71 515 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 RUFY1Q96T51 708 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms