RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 USP4Q13107 963 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 RCN2Q14257 317 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 REXO1L1PQ8IX06 675 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CNBD1Q8NA66 436 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 WDR36Q8NI36 951 aaKnown RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SLC39A3Q9BRY0 314 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 TUBGCP4Q9UGJ1 667 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 ANKRD6Q9Y2G4 727 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SH3PXD2BA1X283 911 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 PRLP01236 227 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 KRT19P08727 400 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 GNAT1P11488 350 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CAPRIN1Q14444 709 aaKnown RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 TBC1D9Q6ZT07 1266 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 ZNF654Q8IZM8 581 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 MYDGFQ969H8 173 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 DHRS1Q96LJ7 313 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 INTS13Q9NVM9 706 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 PLS3P13797 630 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 PSMC6P62333 389 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 BCL2A1Q16548 175 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 AASDHQ4L235 1098 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 LENG1Q96BZ8 264 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 AIF1LQ9BQI0 150 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 TPCN1Q9ULQ1 816 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 TAF4O00268 1085 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 ALOX15BO15296 676 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 FKBP6O75344 327 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CALM1P0DP23 149 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CALM2P0DP24 149 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CALM3P0DP25 149 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 TRAPPC10P48553 1259 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 GUCY2FP51841 1108 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 RHOUQ7L0Q8 258 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CHERPQ8IWX8 916 aaKnown RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 KLHL7Q8IXQ5 586 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SMARCAL1Q9NZC9 954 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 AXIN2Q9Y2T1 843 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 C5orf60A6NFR6 353 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 LRRC63Q05C16 580 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 RPS6KA1Q15418 735 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 GNASQ5JWF2 1037 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 DTHD1Q6ZMT9 781 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 EME1Q96AY2 570 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 NOD2Q9HC29 1040 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 H0YJX3 145 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SGTAO43765 313 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SOX6P35712 828 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 COPS6Q7L5N1 327 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 FUCA2Q9BTY2 467 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 ANKRD50Q9ULJ7 1429 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SPOPO43791 374 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 MMEL1Q495T6 779 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CAMK1DQ8IU85 385 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SHCBP1Q8NEM2 672 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SYMPKQ92797 1274 aaKnown RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 RNF41Q9H4P4 317 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 NCAM2O15394 837 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 MDH1P40925 334 aaKnown RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SDE2Q6IQ49 451 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 USP13Q92995 863 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 MYL10Q9BUA6 226 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 MCUBQ9NWR8 336 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 DCAF16Q9NXF7 216 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SYNMO15061 1565 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 A6NJR5 290 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 EYA4O95677 639 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 CDH2P19022 906 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SPARCL1Q14515 664 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 ARMC6Q6NXE6 501 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 TOM1L2Q6ZVM7 507 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 PHF23Q9BUL5 403 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-202ENST00000344113 SUGT1Q9Y2Z0 365 aa3.99□□□□□ -1.77
SYNE2-202ENST00000344113 AARS2Q5JTZ9 985 aaKnown RBP3.98□□□□□ -1.77
SYNE2-202ENST00000344113 NELFCDQ8IXH7 590 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 CCDC127Q96BQ5 260 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 FAF2Q96CS3 445 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 EHD3Q9NZN3 535 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 SNX7Q9UNH6 387 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 SNX5Q9Y5X3 404 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 SLC12A7Q9Y666 1083 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 PPP1R14AQ96A00 147 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 FAM161BQ96MY7 647 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 TEKT3Q9BXF9 490 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 DNAJC28Q9NX36 388 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 AFG3L2Q9Y4W6 797 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 WDPCPO95876 746 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 DDX5P17844 614 aaKnown RBP3.98□□□□□ -1.77
SYNE2-202ENST00000344113 NFYCQ13952 458 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 SNX17Q15036 470 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 TRMT5Q32P41 509 aaKnown RBP3.98□□□□□ -1.77
SYNE2-202ENST00000344113 ACCSLQ4AC99 568 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 B3GNT6Q6ZMB0 384 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 DNAAF5Q86Y56 855 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 ZNF212Q9UDV6 495 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 ACTL7BQ9Y614 415 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 SLC18A1P54219 525 aa3.98□□□□□ -1.77
SYNE2-202ENST00000344113 PABPC1LQ4VXU2 614 aaKnown RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms