RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 TJP3O95049 919 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 ASLP04424 464 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 CCNB1P14635 433 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 LMNB1P20700 586 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 CALML3P27482 149 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 HOXD12P35452 270 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 NT5C2P49902 561 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 NAPAP54920 295 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 CDK17Q00537 523 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 KCNJ12Q14500 433 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 KRT71Q3SY84 523 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 CFAP221Q4G0U5 840 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 ZSCAN29Q8IWY8 852 aaPredicted RBP12.75□□□□□ -0.37
RTN3-203ENST00000341307 LARGE2Q8N3Y3 721 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 RETREG2Q8NC44 543 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 FERMT2Q96AC1 680 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 RNF25Q96BH1 459 aaPredicted RBP12.75□□□□□ -0.37
RTN3-203ENST00000341307 SH3GLB2Q9NR46 395 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 AGPAT5Q9NUQ2 364 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 FAM198AQ9UFP1 575 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 CCDC194A0A1B0GVG4 234 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 ETS2P15036 469 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 NOVP48745 357 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 HLTFQ14527 1009 aaKnown RBP eCLIP12.75□□□□□ -0.37
RTN3-203ENST00000341307 MUM1Q2TAK8 710 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 RASIP1Q5U651 963 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 SH3BP5LQ7L8J4 393 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 SAPCD2Q86UD0 394 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 PALB2Q86YC2 1186 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 ARHGAP18Q8N392 663 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 SDR16C5Q8N3Y7 309 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 FITM2Q8N6M3 262 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 UBLCP1Q8WVY7 318 aaPredicted RBP12.75□□□□□ -0.37
RTN3-203ENST00000341307 LRRC45Q96CN5 670 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 HIC2Q96JB3 615 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 AGBL1Q96MI9 1066 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 DDX23Q9BUQ8 820 aaKnown RBP12.75□□□□□ -0.37
RTN3-203ENST00000341307 SPZ1Q9BXG8 430 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 TDRD3Q9H7E2 651 aaKnown RBP12.75□□□□□ -0.37
RTN3-203ENST00000341307 CTTNBP2NLQ9P2B4 639 aa12.75□□□□□ -0.37
RTN3-203ENST00000341307 IGKV6D-41A0A0C4DH26 115 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 ATP9AO75110 1047 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 HNRNPCP07910 306 aaKnown RBP eCLIP12.74□□□□□ -0.373e-6■■■□□ 17
RTN3-203ENST00000341307 ITGA2BP08514 1039 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 ZFXP17010 805 aaPredicted RBP12.74□□□□□ -0.37
RTN3-203ENST00000341307 TSR1Q2NL82 804 aaKnown RBP12.74□□□□□ -0.37
RTN3-203ENST00000341307 TCERG1LQ5VWI1 586 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 TTBK2Q6IQ55 1244 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 MB21D1Q8N884 522 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.74□□□□□ -0.37
RTN3-203ENST00000341307 CLMNQ96JQ2 1002 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 NUDCD1Q96RS6 583 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 PRMT1Q99873 361 aaKnown RBP12.74□□□□□ -0.37
RTN3-203ENST00000341307 CCDC134Q9H6E4 229 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 UTP6Q9NYH9 597 aaKnown RBP12.74□□□□□ -0.37
RTN3-203ENST00000341307 PDP2Q9P2J9 529 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 SALL4Q9UJQ4 1053 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 USP15Q9Y4E8 981 aaPredicted RBP12.74□□□□□ -0.37
RTN3-203ENST00000341307 COMMD3-BMI1R4GMX3 469 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 FER1L6Q2WGJ9 1857 aa12.74□□□□□ -0.37
RTN3-203ENST00000341307 SMCO2A6NFE2 343 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 NVLO15381 856 aaKnown RBP12.73□□□□□ -0.37
RTN3-203ENST00000341307 RAD17O75943 681 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 HLA-DOAP06340 250 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 YY1P25490 414 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 SLC16A2P36021 539 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 MMP13P45452 471 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 GSTM4Q03013 218 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 KANK3Q6NY19 840 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 ZNF554Q86TJ5 538 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 DDX42Q86XP3 938 aaKnown RBP eCLIP12.73□□□□□ -0.37
RTN3-203ENST00000341307 C4orf32Q8N8J7 132 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 COA7Q96BR5 231 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 ZNF653Q96CK0 615 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 TTYH3Q9C0H2 523 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 TMEM60Q9H2L4 133 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 TRPV5Q9NQA5 729 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 SEC63Q9UGP8 760 aaKnown RBP12.73□□□□□ -0.37
RTN3-203ENST00000341307 INTUQ9ULD6 942 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 MAGEA13PA6NCF6 341 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 PP2D1A8MPX8 630 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 H0Y3Z8 333 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 DDNO94850 711 aaPredicted RBP12.73□□□□□ -0.37
RTN3-203ENST00000341307 TTLL1O95922 423 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 KLHDC7AQ5VTJ3 777 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 KCTD1Q719H9 257 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 ANKLE1Q8NAG6 615 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 ZNF507Q8TCN5 953 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 WDR60Q8WVS4 1066 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 LENG1Q96BZ8 264 aaPredicted RBP12.73□□□□□ -0.37
RTN3-203ENST00000341307 PPP1R14BQ96C90 147 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 DHTKD1Q96HY7 919 aaPredicted RBP12.73□□□□□ -0.37
RTN3-203ENST00000341307 PRMT6Q96LA8 375 aaPredicted RBP12.73□□□□□ -0.37
RTN3-203ENST00000341307 TMEM260Q9NX78 707 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 EFR3BQ9Y2G0 817 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 PLIN4Q96Q06 1357 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 MROH7Q68CQ1 1323 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 ZNF541Q9H0D2 1346 aa12.73□□□□□ -0.37
RTN3-203ENST00000341307 TRIM43BA6NCK2 446 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 PLEKP08567 350 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms