RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SCP2P22307 547 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 SERPINB4P48594 390 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 GALCP54803 685 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 C1orf228Q6PIY5 440 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 RASGRP2Q7LDG7 609 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 RHPN2Q8IUC4 686 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 ACSF2Q96CM8 615 aaPredicted RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 THTPAQ9BU02 230 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 TRIM9Q9C026 710 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 ING2Q9H160 280 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 SLAIN2Q9P270 581 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 ARHGAP26Q9UNA1 814 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 IGF2BP3O00425 579 aaKnown RBP eCLIP9.25□□□□□ -0.93
RTN3-202ENST00000339997 HSPA6P17066 643 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 CCDC85BQ15834 202 aaPredicted RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 FAM196AQ6ZSG2 479 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 MSTO1Q9BUK6 570 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 EFHD1Q9BUP0 239 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 MIS12Q9H081 205 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 DCP1AQ9NPI6 582 aaPredicted RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 SEMA3EO15041 775 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 OATP04181 439 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 GYS1P13807 737 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 ARSEP51690 589 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 ARL4CP56559 192 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 THOC5Q13769 683 aaKnown RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 SPOUT1Q5T280 376 aaKnown RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 CPA5Q8WXQ8 436 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 AGAP3Q96P47 875 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 FAM49AQ9H0Q0 323 aaPredicted RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 TMEM60Q9H2L4 133 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 AURKCQ9UQB9 309 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 EMSYQ7Z589 1322 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 TMEM120BA0PK00 339 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 GSTA4O15217 222 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 E2F6O75461 281 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 DGKIO75912 1065 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 MCF2P10911 925 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 PDHBP11177 359 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 GAP43P17677 238 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 STAT2P52630 851 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 RPS6P62753 249 aaKnown RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 EXOSC10Q01780 885 aaKnown RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 YWHAHQ04917 246 aaPredicted RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 CUL3Q13618 768 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 PLCB4Q15147 1175 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 KNOP1Q1ED39 458 aaKnown RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 RAD54LQ92698 747 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 INPP5DQ92835 1189 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 KIAA1210Q9ULL0 1709 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 SYNGAP1Q96PV0 1343 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 ZNF233A6NK53 670 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 CORO7P57737 925 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 SESN2P58004 480 aaPredicted RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 SEPT2Q15019 361 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 ATG16L1Q676U5 607 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 NAIF1Q69YI7 327 aaPredicted RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 PDXDC1Q6P996 788 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 ZNF579Q8NAF0 562 aaKnown RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 SLC35G2Q8TBE7 412 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 CCHCR1Q8TD31 782 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 PCDHA6Q9UN73 950 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 PCDHA8Q9Y5H6 950 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 CAPN6Q9Y6Q1 641 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 RASSF10A6NK89 507 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 TJP3O95049 919 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 MYL1P05976 194 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 TARSP26639 723 aaKnown RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 ERVK-24P63145 666 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 NSUN2Q08J23 767 aaKnown RBP eCLIP9.24□□□□□ -0.93
RTN3-202ENST00000339997 PADI6Q6TGC4 694 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 OR6B3Q8NGW1 331 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 ATP6V0A1Q93050 837 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 XPO6Q96QU8 1125 aaKnown RBP9.24□□□□□ -0.93
RTN3-202ENST00000339997 KIF9Q9HAQ2 790 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 FAM8A1Q9UBU6 413 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 V9GYQ6 96 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 PTCH1Q13635 1447 aa9.24□□□□□ -0.93
RTN3-202ENST00000339997 PNMA6FA0A0J9YX94 578 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 GCFC2P16383 781 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 NLRP11P59045 1033 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 UBE3AQ05086 875 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 KIAA1755Q5JYT7 1200 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 SLC30A9Q6PML9 568 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 TRPM8Q7Z2W7 1104 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 XXYLT1Q8NBI6 393 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 PDCD6IPQ8WUM4 868 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 NCLNQ969V3 563 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 TRABDQ9H4I3 376 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 TMEM206Q9H813 350 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 L3MBTL1Q9Y468 752 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 SASH3O75995 380 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 KCNA3P22001 575 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 PSMC1P62191 440 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 SF3B3Q15393 1217 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 ZC2HC1CQ53FD0 456 aaPredicted RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 SLC27A3Q5K4L6 730 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 TBC1D9BQ66K14 1250 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 TRIM42Q8IWZ5 723 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 NIM1KQ8IY84 436 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms