RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 USP20Q9Y2K6 914 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 GAS2O43903 313 aaKnown RBP14.58□□□□□ -0.08
HMGB1-202ENST00000339872 HBP1O60381 514 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 TLR2O60603 784 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF286BP0CG31 522 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 SCP2P22307 547 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 KIF11P52732 1056 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 ARID5AQ03989 594 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 MAP2K5Q13163 448 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 SLC9C1Q4G0N8 1177 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 MORN1Q5T089 497 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 IER5Q5VY09 327 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 HGSNATQ68CP4 663 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 KIAA1328Q86T90 577 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 EXOC8Q8IYI6 725 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 EMID1Q96A84 441 aaPredicted RBP14.58□□□□□ -0.08
HMGB1-202ENST00000339872 FAM155AB1AL88 458 aaPredicted RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 FANCGO15287 622 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 AKR1B10O60218 316 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 KIF5CO60282 957 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 ABL1P00519 1130 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 SMPD1P17405 629 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 GARTP22102 1010 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 ARHGAP25P42331 645 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 GCLMP48507 274 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 INHBEP58166 350 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 CYP27A1Q02318 531 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 PPP3CAQ08209 521 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 MKRN4PQ13434 485 aaPredicted RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 ASIC2Q16515 512 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 GJB7Q6PEY0 223 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 C17orf99Q6UX52 265 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 GPD1LQ8N335 351 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 PSPC1Q8WXF1 523 aaKnown RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 WDR24Q96S15 920 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 INTS2Q9H0H0 1204 aaKnown RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 RNPEPQ9H4A4 650 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 FBXL5Q9UKA1 691 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 AJAP1Q9UKB5 411 aaPredicted RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 IGKV6-21A0A0C4DH24 114 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 ADCY3O60266 1144 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 N4BP1O75113 896 aaKnown RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 SERPING1P05155 500 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 IGBP1P78318 339 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 SPA17Q15506 151 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 DUSP28Q4G0W2 176 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 C1orf220Q5T0J3 134 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 KCNN1Q92952 543 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 CCDC127Q96BQ5 260 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 FBXL18Q96ME1 805 aa14.57□□□□□ -0.08
HMGB1-202ENST00000339872 JPH2Q9BR39 696 aaPredicted RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 GPBP1L1Q9HC44 474 aaPredicted RBP14.57□□□□□ -0.08
HMGB1-202ENST00000339872 EVPLQ92817 2033 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 LAMTOR4Q0VGL1 99 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 SREBF2Q12772 1141 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 GRM1Q13255 1194 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 MAPK8IP2Q13387 824 aaPredicted RBP14.56□□□□□ -0.08
HMGB1-202ENST00000339872 MXD4Q14582 209 aaPredicted RBP14.56□□□□□ -0.08
HMGB1-202ENST00000339872 ENOX2Q16206 610 aaKnown RBP14.56□□□□□ -0.08
HMGB1-202ENST00000339872 IQCEQ6IPM2 695 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 MSL3Q8N5Y2 521 aaKnown RBP14.56□□□□□ -0.08
HMGB1-202ENST00000339872 OR6J1Q8NGC5 347 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 ZBTB10Q96DT7 871 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 FAM213AQ9BRX8 229 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 TMEM134Q9H6X4 195 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 ZFYVE28Q9HCC9 887 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 AIPL1Q9NZN9 384 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 TRIM10Q9UDY6 481 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 TFR2Q9UP52 801 aa14.56□□□□□ -0.08
HMGB1-202ENST00000339872 SSU72P8A0A1W2PR75 194 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF263O14978 683 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 ADCY6O43306 1168 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 SRGAP2CP0DJJ0 459 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 CASQ1P31415 396 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 MXI1P50539 228 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 KLHL30Q0D2K2 578 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 CETN1Q12798 172 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 RHPN2Q8IUC4 686 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 METTL13Q8N6R0 699 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 RNF149Q8NC42 400 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 CCDC102AQ96A19 550 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 JAKMIP2Q96AA8 810 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 TARS2Q9BW92 718 aaKnown RBP14.55□□□□□ -0.08
HMGB1-202ENST00000339872 HAUS4Q9H6D7 363 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 ANKFY1Q9P2R3 1169 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 SUCLA2Q9P2R7 463 aaPredicted RBP14.55□□□□□ -0.08
HMGB1-202ENST00000339872 MYO6Q9UM54 1294 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 PIGRP01833 764 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 EDN1P05305 212 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 INSRRP14616 1297 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 MATR3P43243 847 aaKnown RBP eCLIP14.55□□□□□ -0.08
HMGB1-202ENST00000339872 CLCN3P51790 818 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 CYP24A1Q07973 514 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 CRHR2Q13324 411 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF569Q5MCW4 686 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 PRAMEF19Q5SWL8 479 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 IQSEC1Q6DN90 963 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 EFCAB12Q6NXP0 572 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 PARD3BQ8TEW8 1205 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 FLRT1Q9NZU1 646 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms