RNA–Protein interactions for RNA: ENST00000337571.8

CAPN3-202, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,271 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-202ENST00000337571 TMEM143Q96AN5 459 aa11.9□□□□□ -0.5
CAPN3-202ENST00000337571 CCDC43Q96MW1 224 aaKnown RBP11.9□□□□□ -0.5
CAPN3-202ENST00000337571 LXNQ9BS40 222 aa11.9□□□□□ -0.5
CAPN3-202ENST00000337571 DHX33Q9H6R0 707 aaKnown RBP11.9□□□□□ -0.5
CAPN3-202ENST00000337571 IFT122Q9HBG6 1241 aa11.9□□□□□ -0.5
CAPN3-202ENST00000337571 RGL1Q9NZL6 768 aa11.9□□□□□ -0.5
CAPN3-202ENST00000337571 KANSL3Q9P2N6 904 aa11.9□□□□□ -0.5
CAPN3-202ENST00000337571 STK39Q9UEW8 545 aa11.9□□□□□ -0.5
CAPN3-202ENST00000337571 PCDHB2Q9Y5E7 798 aa11.9□□□□□ -0.5
CAPN3-202ENST00000337571 WDFY4Q6ZS81 3184 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 C2orf71A6NGG8 1288 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 DTNBO60941 627 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 ERLIN2O94905 339 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 CTDNEP1O95476 244 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 ALDH2P05091 517 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 NEK4P51957 841 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 CYP4A11Q02928 519 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 NR5A1Q13285 461 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 TFDP1Q14186 410 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 CTTNQ14247 550 aaKnown RBP11.89□□□□□ -0.51
CAPN3-202ENST00000337571 MXD4Q14582 209 aaPredicted RBP11.89□□□□□ -0.51
CAPN3-202ENST00000337571 CALCRLQ16602 461 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 ERICH6BQ5W0A0 696 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 VPS52Q8N1B4 723 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 PDCD7Q8N8D1 485 aaKnown RBP11.89□□□□□ -0.51
CAPN3-202ENST00000337571 CNNM3Q8NE01 707 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 VN1R2Q8NFZ6 395 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 DYDC2Q96IM9 177 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 MTRQ99707 1265 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 APOL5Q9BWW9 433 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 GBP3Q9H0R5 595 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 KCNH6Q9H252 994 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 UBN1Q9NPG3 1134 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 AGPAT5Q9NUQ2 364 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 NR2E1Q9Y466 385 aa11.89□□□□□ -0.51
CAPN3-202ENST00000337571 CNTNAP2Q9UHC6 1331 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 OFD1O75665 1012 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 SLITRK3O94933 977 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 TXKP42681 527 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 ITIH3Q06033 890 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 KCNC3Q14003 757 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 EMC2Q15006 297 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 PCBP1Q15365 356 aaKnown RBP eCLIP11.88□□□□□ -0.51
CAPN3-202ENST00000337571 SAFBQ15424 915 aaKnown RBP eCLIP11.88□□□□□ -0.51
CAPN3-202ENST00000337571 ME3Q16798 604 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 TRIM67Q6ZTA4 783 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 HFE2Q6ZVN8 426 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 ZBTB33Q86T24 672 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 DDX53Q86TM3 631 aaKnown RBP11.88□□□□□ -0.51
CAPN3-202ENST00000337571 FERMT3Q86UX7 667 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 RNF149Q8NC42 400 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 SUSD6Q92537 303 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 GTF3C6Q969F1 213 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 PBXIP1Q96AQ6 731 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 IGSF21Q96ID5 467 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 NECTIN4Q96NY8 510 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 EIF2AK1Q9BQI3 630 aaKnown RBP11.88□□□□□ -0.51
CAPN3-202ENST00000337571 S1PR5Q9H228 398 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 NRDE2Q9H7Z3 1164 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 TTC12Q9H892 705 aaPredicted RBP11.88□□□□□ -0.51
CAPN3-202ENST00000337571 TSHZ2Q9NRE2 1034 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 TBC1D13Q9NVG8 400 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 WRAP73Q9P2S5 460 aaPredicted RBP11.88□□□□□ -0.51
CAPN3-202ENST00000337571 HCFC2Q9Y5Z7 792 aa11.88□□□□□ -0.51
CAPN3-202ENST00000337571 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.87□□□□□ -0.51
CAPN3-202ENST00000337571 NEMFO60524 1076 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 CLASP2O75122 1294 aaKnown RBP11.87□□□□□ -0.51
CAPN3-202ENST00000337571 NR1I2O75469 434 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 GALTP07902 379 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 ITGA4P13612 1032 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 FDPSP14324 419 aaKnown RBP11.87□□□□□ -0.51
CAPN3-202ENST00000337571 ZXDAP98168 799 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 EARS2Q5JPH6 523 aaKnown RBP11.87□□□□□ -0.51
CAPN3-202ENST00000337571 SYCE2Q6PIF2 218 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 MRPL10Q7Z7H8 261 aaKnown RBP11.87□□□□□ -0.51
CAPN3-202ENST00000337571 PPFIBP1Q86W92 1011 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 SUGP1Q8IWZ8 645 aaKnown RBP11.87□□□□□ -0.51
CAPN3-202ENST00000337571 HACE1Q8IYU2 909 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 RIPOR3Q96MK2 946 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 EMILIN2Q9BXX0 1053 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 ADAM7Q9H2U9 754 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 RSAD1Q9HA92 442 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 ANKEF1Q9NU02 776 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 FAN1Q9Y2M0 1017 aa11.87□□□□□ -0.51
CAPN3-202ENST00000337571 TMEM221A6NGB7 291 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 BTBD18B2RXH4 712 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 INO80B-WBP1J3KQ70 363 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 M0R296 226 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 ZBTB39O15060 712 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 DGAT1O75907 488 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 POMCP01189 267 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 CTSAP10619 480 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 XRCC6P12956 609 aaKnown RBP eCLIP11.86□□□□□ -0.51
CAPN3-202ENST00000337571 AXLP30530 894 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 MTHFRP42898 656 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 FOSBP53539 338 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 SPIRE1Q08AE8 756 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 ATAT1Q5SQI0 421 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 NOTUMQ6P988 496 aa11.86□□□□□ -0.51
CAPN3-202ENST00000337571 BMP8AQ7Z5Y6 402 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms