RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.32■□□□□ 0.2
CCDC88C-202ENST00000334448 SCN10AQ9Y5Y9 1956 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 GTPBP10A4D1E9 387 aaKnown RBP16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 ANKRD63C9JTQ0 380 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 INHAP05111 366 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 GNAT1P11488 350 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 GRK4P32298 578 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 PHKA2P46019 1235 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 IGBP1P78318 339 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 SLFN12LQ6IEE8 588 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 NFRKBQ6P4R8 1299 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 INTS8Q75QN2 995 aaKnown RBP16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 CCDC186Q7Z3E2 898 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 RHPN2Q8IUC4 686 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 METTL13Q8N6R0 699 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 SLC35C1Q96A29 364 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 PRIMPOLQ96LW4 560 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 BEGAINQ9BUH8 593 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 KIAA1586Q9HCI6 787 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 SETD4Q9NVD3 440 aa16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.31■□□□□ 0.2
CCDC88C-202ENST00000334448 TISP43B9A030 160 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 ACKR2O00590 384 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 PMM2O15305 246 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 EXOC3O60645 756 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 CABYRO75952 493 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 PGK1P00558 417 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 RPLP2P05387 115 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 LIG4P49917 911 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 CYP2J2P51589 502 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 GPC3P51654 580 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 C1QTNF8P60827 252 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 MBTD1Q05BQ5 628 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 PCBP1Q15365 356 aaKnown RBP eCLIP16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 MAPK6Q16659 721 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 CEP135Q66GS9 1140 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 PCSK9Q8NBP7 692 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 MRPL4Q9BYD3 311 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 TTYH3Q9C0H2 523 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 IFT122Q9HBG6 1241 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 PRMT7Q9NVM4 692 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 SIK3Q9Y2K2 1263 aa16.3■□□□□ 0.2
CCDC88C-202ENST00000334448 A0A0B4J269 797 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 C17orf102A2RUQ5 167 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 ABLIM1O14639 778 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 TOM1L1O75674 476 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 AFPP02771 609 aaKnown RBP16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 EDN1P05305 212 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 PRKCBP05771 671 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 PROZP22891 400 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 BFSP1Q12934 665 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 ARID5BQ14865 1188 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 AMHR2Q16671 573 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 TAF2Q6P1X5 1199 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 SRGAP1Q7Z6B7 1085 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 RPAINQ86UA6 219 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 ZBTB10Q96DT7 871 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 TSEN34Q9BSV6 310 aaKnown RBP16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 NUP58Q9BVL2 599 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 EDEM3Q9BZQ6 932 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 ADAMTS10Q9H324 1103 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 GTF2IRD1Q9UHL9 959 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 PTCH2Q9Y6C5 1203 aa16.29■□□□□ 0.2
CCDC88C-202ENST00000334448 CNTNAP2Q9UHC6 1331 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 A0A1W2PQJ5 194 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 MOXD2PA6NHM9 499 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 P4HA2O15460 535 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 EXTL3O43909 919 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 GYPCP04921 128 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 SRGAP2CP0DJJ0 459 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 FECHP22830 423 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 SFPQP23246 707 aaKnown RBP eCLIP16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 PTPN11Q06124 597 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 KCNH2Q12809 1159 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 HIC1Q14526 733 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 SYCP1Q15431 976 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 LHX8Q68G74 356 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 TSHZ1Q6ZSZ6 1077 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 RNF180Q86T96 592 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 LRRC8AQ8IWT6 810 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 NME8Q8N427 588 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 C7orf31Q8N865 590 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 TMC2Q8TDI7 906 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 CCDC51Q96ER9 411 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 BICD1Q96G01 975 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 MFSD14AQ96MC6 490 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 NLRP4Q96MN2 994 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 ACO2Q99798 780 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 TARS2Q9BW92 718 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 PTPRHQ9HD43 1115 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 HMX1Q9NP08 348 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 HDAC6Q9UBN7 1215 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 AKT3Q9Y243 479 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 TRIM17Q9Y577 477 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 HTTP42858 3142 aa16.28■□□□□ 0.2
CCDC88C-202ENST00000334448 LDHAP00338 332 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 GJB1P08034 283 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 CYP2C9P11712 490 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 KRT13P13646 458 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 POU5F1Q01860 360 aaKnown RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms