RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 SHOX2O60902 331 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 RASGRF1Q13972 1273 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 UNC13DQ70J99 1090 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 FRA10AC1Q70Z53 315 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 LRRN4CLQ8ND94 238 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 MXD3Q9BW11 206 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CCDC134Q9H6E4 229 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 DMAP1Q9NPF5 467 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PSMC3IPQ9P2W1 217 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TMCO1Q9UM00 188 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PHF8Q9UPP1 1060 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 LZTS1Q9Y250 596 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 R3HDM2Q9Y2K5 976 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 RAD51CO43502 376 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 KITP10721 976 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CDK17Q00537 523 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PDAP1Q13442 181 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 UBE3CQ15386 1083 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 AOC3Q16853 763 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 GJC2Q5T442 439 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 COL23A1Q86Y22 540 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 RBM12BQ8IXT5 1001 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 EME1Q96AY2 570 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 DNAJC7Q99615 494 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 GPR108Q9NPR9 543 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CIDEBQ9UHD4 219 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 C2CD2Q9Y426 696 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SUPT3HO75486 399 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 S100A5P33763 92 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 EIF2B2P49770 351 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 MTTPP55157 894 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CTSWP56202 376 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 FAM69CQ0P6D2 419 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SLC39A6Q13433 755 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TRMT1LQ7Z2T5 733 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 GPR141Q7Z602 305 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CHP1Q99653 195 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 FOXP3Q9BZS1 431 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TRIM10Q9UDY6 481 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CCDC195A0A1B0GUA6 201 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PTK2Q05397 1052 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 KCTD6Q8NC69 237 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 H0Y626 953 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 H3BRJ5 948 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TRIM16O95361 564 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 EIF4A1P60842 406 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 KDSRQ06136 332 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 MRPL28Q13084 256 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 FAM83BQ5T0W9 1011 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 BSPRYQ5W0U4 402 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 ZNF354CQ86Y25 554 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SYN2Q92777 582 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 RPS6KC1Q96S38 1066 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 NYXQ9GZU5 481 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SSU72P8A0A1W2PR75 194 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 H0YCG3 227 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SH3BP5O60239 455 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 GAS7O60861 476 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TNNI1P19237 187 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 KYNUQ16719 465 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SIX6OS1Q8N1H7 587 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 RFFLQ8WZ73 363 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CNBD2Q96M20 576 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 ASCC2Q9H1I8 757 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TUBE1Q9UJT0 475 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TRIM49BA6NDI0 452 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PIK3R2O00459 728 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SYF2O95926 243 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 POLR2BP30876 1174 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TRIP13Q15645 432 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PATL1Q86TB9 770 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PRPF39Q86UA1 669 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 FAM153AQ9UHL3 310 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 WDR37Q9Y2I8 494 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 ARIH1Q9Y4X5 557 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SNX5Q9Y5X3 404 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 E9PMD0 336 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 LSM1O15116 133 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 RGS2P41220 211 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 CACNA2D1P54289 1103 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 FMR1Q06787 632 aaKnown RBP eCLIP7.49□□□□□ -1.218e-7■■■□□ 16.5
SMC1A-201ENST00000322213 TBL3Q12788 808 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 R3HDM1Q15032 1099 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 C11orf91Q3C1V1 193 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 KIAA1755Q5JYT7 1200 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 HORMAD1Q86X24 394 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TRIM50Q86XT4 487 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PBXIP1Q96AQ6 731 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 COQ7Q99807 217 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 SLC52A2Q9HAB3 445 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PARVGQ9HBI0 331 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 DDX28Q9NUL7 540 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 TLR7Q9NYK1 1049 aaKnown RBP7.49□□□□□ -1.21
SMC1A-201ENST00000322213 GGT7Q9UJ14 662 aa7.49□□□□□ -1.21
SMC1A-201ENST00000322213 PRRC2BQ5JSZ5 2229 aaKnown RBP7.48□□□□□ -1.21
SMC1A-201ENST00000322213 DEFA1P59665 94 aa7.48□□□□□ -1.21
SMC1A-201ENST00000322213 DEFA3P59666 94 aa7.48□□□□□ -1.21
SMC1A-201ENST00000322213 DPYDQ12882 1025 aa7.48□□□□□ -1.21
SMC1A-201ENST00000322213 TRAF7Q6Q0C0 670 aa7.48□□□□□ -1.21
SMC1A-201ENST00000322213 IP6K1Q92551 441 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms