RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZBTB33Q86T24 672 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 PPHLN1Q8NEY8 458 aaKnown RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 PFASO15067 1338 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 CLK1P49759 484 aaKnown RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 NLRP11P59045 1033 aaKnown RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 PITPNM2Q9BZ72 1349 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 LRRC53A6NM62 1247 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 GOLGA8TH3BQL2 631 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 SH2B2O14492 632 aaPredicted RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 CDC27P30260 824 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 TRIM16LQ309B1 348 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 KIAA1841Q6NSI8 718 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 DTX3LQ8TDB6 740 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 EIF3DO15371 548 aaKnown RBP eCLIP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 PER1O15534 1290 aaPredicted RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 HSPA13P48723 471 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF579Q8NAF0 562 aaKnown RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 CCT7Q99832 543 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 KIAA1586Q9HCI6 787 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 IMPDH2P12268 514 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 CCT8L2Q96SF2 557 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 OLFML3Q9NRN5 406 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 FBXL5Q9UKA1 691 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 TOMM70O94826 608 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 TSSK1BQ9BXA7 367 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 CASS4Q9NQ75 786 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 FAM32AQ9Y421 112 aaKnown RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 AASDHQ4L235 1098 aaPredicted RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 EGFL8Q99944 293 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 K7ERI5 159 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 CYP21A2P08686 494 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 KPNB1Q14974 876 aaKnown RBP14.69□□□□□ -0.06
CSPG4-201ENST00000308508 KCTD1Q719H9 257 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 TRIM69Q86WT6 500 aa14.69□□□□□ -0.06
CSPG4-201ENST00000308508 NFIBO00712 420 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 TNIP2Q8NFZ5 429 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 SCN3BQ9NY72 215 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 PDP2Q9P2J9 529 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 PCDHB6Q9Y5E3 794 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 NCAPHQ15003 741 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 PRUNE1Q86TP1 453 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 BRD8Q9H0E9 1235 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 ANTXR1Q9H6X2 564 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 ZCCHC17Q9NP64 241 aaKnown RBP14.68□□□□□ -0.06
CSPG4-201ENST00000308508 GRIN2AQ12879 1464 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 ARIH2O95376 493 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 TBXAS1P24557 533 aaPredicted RBP14.68□□□□□ -0.06
CSPG4-201ENST00000308508 FLCNQ8NFG4 579 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 ARHGEF1Q92888 912 aaKnown RBP14.68□□□□□ -0.06
CSPG4-201ENST00000308508 SH3GL1Q99961 368 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 PPCSQ9HAB8 311 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 GPR108Q9NPR9 543 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 ABCC2Q92887 1545 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 KCTD2Q14681 263 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF667Q5HYK9 610 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 LRIG3Q6UXM1 1119 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 DDHD1Q8NEL9 900 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 KCNA2P16389 499 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 PRAMEP78395 509 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 NPHS2Q9NP85 383 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 SELENONQ9NZV5 590 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 LRFN2Q9ULH4 789 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 TLK2Q86UE8 772 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 TERB1Q8NA31 727 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 AGBL1Q96MI9 1066 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 RANBP17Q9H2T7 1088 aaKnown RBP14.68□□□□□ -0.06
CSPG4-201ENST00000308508 SYTL2Q9HCH5 934 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 TMEM161AQ9NX61 479 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 ARHGAP31Q2M1Z3 1444 aa14.68□□□□□ -0.06
CSPG4-201ENST00000308508 GOLGA8RI6L899 631 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 LRRC36Q1X8D7 754 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 TRPM8Q7Z2W7 1104 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 PCYOX1LQ8NBM8 494 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 CNGB3Q9NQW8 809 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 ATXN8OSP0DMR3 200 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 TCF3P15923 654 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 MARK3P27448 753 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 LRRC31Q6UY01 552 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 CDKL3Q8IVW4 592 aaPredicted RBP14.67□□□□□ -0.06
CSPG4-201ENST00000308508 BTG4Q9NY30 223 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 UBE4BO95155 1302 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 ADGBQ8N7X0 1667 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 KLHL2O95198 593 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 TAP1Q03518 808 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 RNF219Q5W0B1 726 aaPredicted RBP14.67□□□□□ -0.06
CSPG4-201ENST00000308508 TRABDQ9H4I3 376 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 MAD2L2Q9UI95 211 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 MAP3K15Q6ZN16 1313 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF518AQ6AHZ1 1483 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 ERVV-2B6SEH9 535 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 RHOT1Q8IXI2 618 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 BFARQ9NZS9 450 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 AP4S1Q9Y587 144 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 ESYT3A0FGR9 886 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 SYNDIG1LA6NDD5 238 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 CYP2C19P33261 490 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 RECQLP46063 649 aaPredicted RBP14.67□□□□□ -0.06
CSPG4-201ENST00000308508 ARID5BQ14865 1188 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 CENPPQ6IPU0 288 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 TRIM72Q6ZMU5 477 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms