RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TMEM117Q9H0C3 514 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 CALCOCO1Q9P1Z2 691 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 COG5Q9UP83 839 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 PHIPQ8WWQ0 1821 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 NR3C2P08235 984 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 USP8P40818 1118 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 NPTX2P47972 431 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 MXI1P50539 228 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 ELMO3Q96BJ8 720 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 CCDC127Q96BQ5 260 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 ST6GALNAC4Q9H4F1 302 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 ACP6Q9NPH0 428 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 ARID2Q68CP9 1835 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 GOLGA6CA6NDK9 693 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 CCDC172P0C7W6 258 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 GOLGA6DP0CG33 693 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 RPS12P25398 132 aaKnown RBP21.73■■□□□ 1.07
VPS53-201ENST00000291074 SFNP31947 248 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 MAP2K1Q02750 393 aaPredicted RBP21.73■■□□□ 1.07
VPS53-201ENST00000291074 PPATQ06203 517 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 SCYL3Q8IZE3 742 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 TMEM161BQ8NDZ6 487 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 ZIM3Q96PE6 472 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 GOLGA6AQ9NYA3 693 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 AMFRQ9UKV5 643 aa21.73■■□□□ 1.07
VPS53-201ENST00000291074 SRCAPQ6ZRS2 3230 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 ZNF862O60290 1169 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 CETN1Q12798 172 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 VSIG10LQ86VR7 867 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 POP1Q99575 1024 aaKnown RBP21.72■■□□□ 1.07
VPS53-201ENST00000291074 SH3GL2Q99962 352 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 MOV10L1Q9BXT6 1211 aaKnown RBP21.72■■□□□ 1.07
VPS53-201ENST00000291074 GABBR1Q9UBS5 961 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 TBX20Q9UMR3 447 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 KRIT1O00522 736 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 RFX1P22670 979 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 NLRX1Q86UT6 975 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 DDX42Q86XP3 938 aaKnown RBP eCLIP21.72■■□□□ 1.07
VPS53-201ENST00000291074 REPS2Q8NFH8 660 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 ARL8AQ96BM9 186 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 ANKEF1Q9NU02 776 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 GINM1Q9NU53 330 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 TMEM51Q9NW97 253 aa21.72■■□□□ 1.07
VPS53-201ENST00000291074 CHORDC1Q9UHD1 332 aaPredicted RBP21.72■■□□□ 1.07
VPS53-201ENST00000291074 DENND3A2RUS2 1198 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 VGLL3A8MV65 326 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 SART1O43290 800 aaKnown RBP21.71■■□□□ 1.07
VPS53-201ENST00000291074 HSF2BPO75031 334 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 RGS20O76081 388 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 PTPRAP18433 802 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 CCND2P30279 289 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 NNTQ13423 1086 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 SNRNP35Q16560 246 aaKnown RBP21.71■■□□□ 1.07
VPS53-201ENST00000291074 DCAF12L1Q5VU92 463 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 LEKR1Q6ZMV7 388 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 ZNF280CQ8ND82 737 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 SEMA4DQ92854 862 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 TOPORSQ9NS56 1045 aaPredicted RBP21.71■■□□□ 1.07
VPS53-201ENST00000291074 TAF3Q5VWG9 929 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 NAA35Q5VZE5 725 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 RPUSD2Q8IZ73 545 aaKnown RBP21.71■■□□□ 1.07
VPS53-201ENST00000291074 RASGEF1CQ8N431 466 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 SAMD3Q8N6K7 520 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 TMEM174Q8WUU8 243 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 PCDHA10Q9Y5I2 948 aa21.71■■□□□ 1.07
VPS53-201ENST00000291074 DDX3YO15523 660 aaKnown RBP21.7■■□□□ 1.06
VPS53-201ENST00000291074 DMP1Q13316 513 aaPredicted RBP21.7■■□□□ 1.06
VPS53-201ENST00000291074 TTMPQ5BVD1 217 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 FAM76AQ8TAV0 307 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 FAM84AQ96KN4 292 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 CEP170P1Q96L14 293 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 KREMEN1Q96MU8 473 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 TIPINQ9BVW5 301 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 ZNF214Q9UL59 606 aaPredicted RBP21.7■■□□□ 1.06
VPS53-201ENST00000291074 PFASO15067 1338 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 ZNFX1Q9P2E3 1918 aaKnown RBP21.7■■□□□ 1.06
VPS53-201ENST00000291074 ANKRD62A6NC57 917 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 SGPL1O95470 568 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 KRT14P02533 472 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 CNGA1P29973 690 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 HLTFQ14527 1009 aaKnown RBP eCLIP21.7■■□□□ 1.06
VPS53-201ENST00000291074 SLC39A4Q6P5W5 647 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 FOXR1Q6PIV2 292 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 PPM1KQ8N3J5 372 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 RUFY1Q96T51 708 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 KMT5AQ9NQR1 393 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 PICK1Q9NRD5 415 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 AMACRQ9UHK6 382 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 NR2E1Q9Y466 385 aa21.7■■□□□ 1.06
VPS53-201ENST00000291074 ADGRA3Q8IWK6 1321 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 P4HA2O15460 535 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 KCNA2P16389 499 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 TMEM132BQ14DG7 1078 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 ALS2CLQ60I27 953 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 MAP4K3Q8IVH8 894 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 CALR3Q96L12 384 aaKnown RBP21.69■■□□□ 1.06
VPS53-201ENST00000291074 FTLP02792 175 aaPredicted RBP21.69■■□□□ 1.06
VPS53-201ENST00000291074 ECHS1P30084 290 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 ANGEL2Q5VTE6 544 aaKnown RBP21.69■■□□□ 1.06
VPS53-201ENST00000291074 ADAT2Q7Z6V5 191 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms