RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 RBM5P52756 815 aaKnown RBP eCLIP3.22□□□□□ -1.89
HERC4-201ENST00000277817 FOXO4P98177 505 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 BTKQ06187 659 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 HSP90AB3PQ58FF7 597 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 SLC9C2Q5TAH2 1124 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 KIAA1211LQ6NV74 962 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 RUFY3Q7L099 469 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 TMC6Q7Z403 805 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 PARD3BQ8TEW8 1205 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 INTS4Q96HW7 963 aaKnown RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 CHAMP1Q96JM3 812 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 RIPOR3Q96MK2 946 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 PPP1R16BQ96T49 567 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 SLC26A6Q9BXS9 759 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 GTPBP4Q9BZE4 634 aaKnown RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 PDCL3Q9H2J4 239 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 DEF6Q9H4E7 631 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 WBP1LQ9NX94 342 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 FCF1Q9Y324 198 aaKnown RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 CASP8AP2Q9UKL3 1982 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 TTC41PQ6P2S7 1318 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 COL1A1P02452 1464 aaPredicted RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 HEG1Q9ULI3 1381 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 RNMTO43148 476 aaKnown RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 ULK1O75385 1050 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 FKBP9O95302 570 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 CES1P23141 567 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 CCR5P51681 352 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 SESN3P58005 492 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 SLC14A2Q15849 920 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 STX1AQ16623 288 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ARHGAP29Q52LW3 1261 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ZNF697Q5TEC3 545 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 IZUMO3Q5VZ72 239 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 MFSD6Q6ZSS7 791 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 FKBP9P1Q75LS8 142 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 KRT27Q7Z3Y8 459 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 IQCA1Q86XH1 822 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 COL23A1Q86Y22 540 aaPredicted RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 ZBTB34Q8NCN2 500 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 IP6K1Q92551 441 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 USP13Q92995 863 aaPredicted RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 HVCN1Q96D96 273 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 FAM227BQ96M60 508 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 PAG1Q9NWQ8 432 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 TLR7Q9NYK1 1049 aaKnown RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 PADI4Q9UM07 663 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ZKSCAN5Q9Y2L8 839 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 FAM227AF5H4B4 570 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 PLA2G6O60733 806 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 IL15P40933 162 aaPredicted RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 AP3B2Q13367 1082 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 PKP1Q13835 747 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 CT47A1Q5JQC4 288 aaPredicted RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 HECTD3Q5T447 861 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 LRFN4Q6PJG9 635 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ARHGEF25Q86VW2 580 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ZNF354CQ86Y25 554 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 CMIPQ8IY22 773 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 KLHL23Q8NBE8 558 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 CTCFLQ8NI51 663 aaPredicted RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 SPPL3Q8TCT6 385 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ERCC4Q92889 916 aaPredicted RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 ARL8AQ96BM9 186 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 EID2BQ96D98 161 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 OSMRQ99650 979 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ZCCHC2Q9C0B9 1178 aaKnown RBP3.22□□□□□ -1.89
HERC4-201ENST00000277817 USP44Q9H0E7 712 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 ATP8A2Q9NTI2 1148 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 SNX14Q9Y5W7 946 aa3.22□□□□□ -1.89
HERC4-201ENST00000277817 GTPBP10A4D1E9 387 aaKnown RBP3.21□□□□□ -1.89
HERC4-201ENST00000277817 ERICH4A6NGS2 130 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 KCNQ3O43525 872 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 SOD2P04179 222 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 SKILP12757 684 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 MYF5P13349 255 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 CTSSP25774 331 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 NLRP5P59047 1200 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 ATP2B3Q16720 1220 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 UBE2Q1Q7Z7E8 422 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 LUZP1Q86V48 1076 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 NSUN6Q8TEA1 469 aaKnown RBP3.21□□□□□ -1.89
HERC4-201ENST00000277817 SMARCC1Q92922 1105 aaPredicted RBP3.21□□□□□ -1.89
HERC4-201ENST00000277817 ACSF2Q96CM8 615 aaPredicted RBP3.21□□□□□ -1.89
HERC4-201ENST00000277817 MTRQ99707 1265 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 SMAD5Q99717 465 aaKnown RBP3.21□□□□□ -1.89
HERC4-201ENST00000277817 TEX13AQ9BXU3 409 aaPredicted RBP3.21□□□□□ -1.89
HERC4-201ENST00000277817 VAT1LQ9HCJ6 419 aa3.21□□□□□ -1.89
HERC4-201ENST00000277817 CDK5RAP2Q96SN8 1893 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 TTLL8A6PVC2 850 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 SGSM2O43147 1006 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZBTB43O43298 467 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZSCAN12O43309 604 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 MAFO75444 373 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 EOMESO95936 686 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 RXRAP19793 462 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 SYKP43405 635 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 PRIM2P49643 509 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 TUBP50607 506 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 UBXN11Q5T124 520 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms