RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 FAM84AQ96KN4 292 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 POP1Q99575 1024 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 PRMT1Q99873 361 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 FBXO28Q9NVF7 368 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 SAMD15Q9P1V8 674 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 TBK1Q9UHD2 729 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 A0A1W2PRG0 241 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 ANKRD62A6NC57 917 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 TBX3O15119 743 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 JAM2P57087 298 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 BFSP1Q12934 665 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 ZKSCAN8Q15776 578 aaPredicted RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 Q4G0T1 1027 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 FOXR2Q6PJQ5 311 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 OTOP1Q7RTM1 612 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 MIER3Q7Z3K6 550 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 ARHGEF19Q8IW93 802 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 HVCN1Q96D96 273 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 XPO6Q96QU8 1125 aaKnown RBP13.63□□□□□ -0.23
LIG1-201ENST00000263274 CRAMP1Q96RY5 1269 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 FAM118BQ9BPY3 351 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 CBWD1Q9BRT8 395 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 TAOK3Q9H2K8 898 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 FAM198AQ9UFP1 575 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 VAV3Q9UKW4 847 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 SH3BP1Q9Y3L3 701 aa13.63□□□□□ -0.23
LIG1-201ENST00000263274 GSTTP1A0A1W2PQM5 241 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 PRELPP51888 382 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 JAG1P78504 1218 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 UBAP2Q5T6F2 1119 aaKnown RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 SIAH1Q8IUQ4 282 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 PRPF38AQ8NAV1 312 aaKnown RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 CCDC197Q8NCU1 140 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 ZSWIM2Q8NEG5 633 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 ZNF653Q96CK0 615 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 CHMP6Q96FZ7 201 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 DDX60LQ5H9U9 1706 aaKnown RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 DNM1LO00429 736 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 SGPL1O95470 568 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 DLATP10515 647 aaKnown RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 SSTR3P32745 418 aaPredicted RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 PADI6Q6TGC4 694 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 HHIPL2Q6UWX4 724 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 C1orf186Q6ZWK4 172 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 SH3BP5LQ7L8J4 393 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 CCDC50Q8IVM0 306 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 SAAL1Q96ER3 474 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 OSBPL7Q9BZF2 842 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 SLC24A3Q9HC58 644 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 SLC12A6Q9UHW9 1150 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 MTUS1Q9ULD2 1270 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 TCRBV7S2A1N4TA0A589 114 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 BTNL10A8MVZ5 291 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 FOXO6A8MYZ6 492 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 NEBLO76041 1014 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 PTENP60484 403 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 LONRF1Q17RB8 773 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 AGBL2Q5U5Z8 902 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 TBC1D1Q86TI0 1168 aaPredicted RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.62□□□□□ -0.23
LIG1-201ENST00000263274 POLR3CQ9BUI4 534 aaPredicted RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 VCPKMTQ9H867 229 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 LARSQ9P2J5 1176 aaKnown RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 WRAP73Q9P2S5 460 aaPredicted RBP13.62□□□□□ -0.23
LIG1-201ENST00000263274 STXBP5LQ9Y2K9 1186 aa13.62□□□□□ -0.23
LIG1-201ENST00000263274 IPO5O00410 1097 aaKnown RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 CES2O00748 559 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 RASGRF2O14827 1237 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 OPLAHO14841 1288 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 SLC16A4O15374 487 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 DDX3YO15523 660 aaKnown RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 FSBPO95073 299 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 RPSAP08865 295 aaKnown RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 MYCLP12524 364 aaPredicted RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 PEX3P56589 373 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 GPC5P78333 572 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 GDAP1Q8TB36 358 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 TEKT3Q9BXF9 490 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 CARD9Q9H257 536 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 UNC45AQ9H3U1 944 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 GPRC5CQ9NQ84 441 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 OLFML3Q9NRN5 406 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 TMOD2Q9NZR1 351 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 KIF1CO43896 1103 aaKnown RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 RPL21P46778 160 aaKnown RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 VAMP7P51809 220 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 GSCP56915 257 aaPredicted RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 MAPK7Q13164 816 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 CEP55Q53EZ4 464 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 DPY19L2P1Q6NXN4 242 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 LRRC34Q8IZ02 419 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 THOC1Q96FV9 657 aaKnown RBP13.61□□□□□ -0.23
LIG1-201ENST00000263274 PLIN4Q96Q06 1357 aa13.61□□□□□ -0.23
LIG1-201ENST00000263274 A0A0A6YYK5 440 aaPredicted RBP13.6□□□□□ -0.23
LIG1-201ENST00000263274 FNTAP49354 379 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 MXI1P50539 228 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 SATB1Q01826 763 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 FAM102BQ5T8I3 360 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 SLFN11Q7Z7L1 901 aa13.6□□□□□ -0.23
LIG1-201ENST00000263274 RASGEF1CQ8N431 466 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms