RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CTIFO43310 598 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MOCS3O95396 460 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 LIG3P49916 1009 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ATP1A2P50993 1020 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 C1DQ13901 141 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 CLEC17AQ6ZS10 378 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 FAM192AQ9GZU8 254 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ZWILCHQ9H900 591 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 POLKQ9UBT6 870 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PITPNM2Q9BZ72 1349 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 CLTCL1P53675 1640 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 KATNA1O75449 491 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 SCN3BQ9NY72 215 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 HDAC6Q9UBN7 1215 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 FMN2Q9NZ56 1722 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ERVV-1B6SEH8 477 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 E5RI56 91 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 H3BMM5 538 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MMP1P03956 469 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 APOA5Q6Q788 366 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 BSNDQ8WZ55 320 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 VPS33AQ96AX1 596 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PRPF18Q99633 342 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ARMC7Q9H6L4 198 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MTO1Q9Y2Z2 717 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ADGRF5Q8IZF2 1346 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 SPDYE2BA6NHP3 402 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 UBAP1LF5GYI3 381 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 AREL1O15033 823 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 CFBP00751 764 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 SPDYE6P0CI01 402 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 TMED10P49755 219 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 LRRC43Q8N309 656 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 NCLNQ969V3 563 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ZFRQ96KR1 1074 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 CDK5RAP1Q96SZ6 601 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PIGUQ9H490 435 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 RPF1Q9H9Y2 349 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 TUBA8Q9NY65 449 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MAP3K20Q9NYL2 800 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 BIRC5O15392 142 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ECDO95905 644 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PRR29P0C7W0 189 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ICA1Q05084 483 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 SPOUT1Q5T280 376 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 E4F1Q66K89 784 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 FAM45BPQ6NSW5 357 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 STARD8Q92502 1023 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 SYMPKQ92797 1274 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PARVAQ9NVD7 372 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MAFGO15525 162 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 OSBPP22059 807 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 STX5Q13190 355 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 TERF2Q15554 542 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 HIF1AQ16665 826 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 LONRF3Q496Y0 759 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ZC3H12BQ5HYM0 836 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 SPATA16Q9BXB7 569 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 AP5M1Q9H0R1 490 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 GPCPD1Q9NPB8 672 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 TFCP2L1Q9NZI6 479 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 HNRNPCP07910 306 aaKnown RBP eCLIP6.43□□□□□ -1.389e-6■■■□□ 16.8
VPS13D-201ENST00000011700 CYP2J2P51589 502 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 POLR2FP61218 127 aaKnown RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 YWHAHQ04917 246 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PIGHQ14442 188 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 NCF4Q15080 339 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 SGSM1Q2NKQ1 1148 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 KIAA1841Q6NSI8 718 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 RFX6Q8HWS3 928 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PRPF3O43395 683 aaKnown RBP6.42□□□□□ -1.38
VPS13D-201ENST00000011700 COBLO75128 1261 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 ASNSP08243 561 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 TALDO1P37837 337 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 BSPRYQ5W0U4 402 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 HEATR6Q6AI08 1181 aaKnown RBP6.42□□□□□ -1.38
VPS13D-201ENST00000011700 SLC26A7Q8TE54 656 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 SYN2Q92777 582 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-201ENST00000011700 MAGEB10Q96LZ2 347 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-201ENST00000011700 RBBP8Q99708 897 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 LRRIQ4A6NIV6 560 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 DIAPH2O60879 1101 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 CCNE1P24864 410 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 PHKA2P46019 1235 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 RGS4P49798 205 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 ADKP55263 362 aaKnown RBP6.42□□□□□ -1.38
VPS13D-201ENST00000011700 GPC5P78333 572 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 PNOCQ13519 176 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 PRMT9Q6P2P2 845 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 DCAF4Q8WV16 495 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 ABHD8Q96I13 439 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 KIAA1024Q9UPX6 916 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 GLI2P10070 1586 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 POC1B-GALNT4F8VUJ3 575 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 SLCO1B7G3V0H7 640 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 EFNA5P52803 228 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 WLSQ5T9L3 541 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 ZFP1Q6P2D0 407 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 XRRA1Q6P2D8 792 aa6.42□□□□□ -1.38
VPS13D-201ENST00000011700 LVRNQ6Q4G3 990 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms