RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeastyeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DDR48YMR173W KRE1P17260 313 aa1.6□□□□□ -2.15
DDR48YMR173W UTR1P21373 530 aa1.6□□□□□ -2.15
DDR48YMR173W VPH2P32341 215 aa1.6□□□□□ -2.15
DDR48YMR173W RPA34P47006 233 aaPredicted RBP1.6□□□□□ -2.15
DDR48YMR173W YNL143CP53908 130 aa1.6□□□□□ -2.15
DDR48YMR173W YNL040WP53960 456 aaPredicted RBP1.6□□□□□ -2.15
DDR48YMR173W RGM1Q00453 211 aa1.6□□□□□ -2.15
DDR48YMR173W YPL080CQ02826 108 aa1.6□□□□□ -2.15
DDR48YMR173W YMR310CQ04867 317 aaPredicted RBP1.6□□□□□ -2.15
DDR48YMR173W DTD1Q07648 150 aaKnown RBP1.6□□□□□ -2.15
DDR48YMR173W FEX1Q08913 375 aa1.6□□□□□ -2.15
DDR48YMR173W FEX2Q08991 375 aa1.6□□□□□ -2.15
DDR48YMR173W GLE1Q12315 538 aa1.6□□□□□ -2.15
DDR48YMR173W TFC7Q12415 435 aa1.6□□□□□ -2.15
DDR48YMR173W STE3P06783 470 aa1.59□□□□□ -2.15
DDR48YMR173W SNF6P18888 332 aa1.59□□□□□ -2.15
DDR48YMR173W LAS1P36146 502 aaPredicted RBP1.59□□□□□ -2.15
DDR48YMR173W MNN5P46982 586 aa1.59□□□□□ -2.15
DDR48YMR173W DBP9Q06218 594 aaKnown RBP1.59□□□□□ -2.15
DDR48YMR173W MRX9Q07349 420 aaKnown RBP1.59□□□□□ -2.15
DDR48YMR173W IES3Q12345 250 aa1.59□□□□□ -2.15
DDR48YMR173W ERP3Q12403 225 aa1.59□□□□□ -2.15
DDR48YMR173W REP1P03871 373 aa1.58□□□□□ -2.16
DDR48YMR173W SAG1P20840 650 aa1.58□□□□□ -2.16
DDR48YMR173W POT1P27796 417 aaKnown RBP RIP-Chip data1.58□□□□□ -2.16not detected
DDR48YMR173W KTI12P34253 313 aaKnown RBP1.58□□□□□ -2.16
DDR48YMR173W YIL089WP40500 205 aa1.58□□□□□ -2.16
DDR48YMR173W UFD1P53044 361 aa1.58□□□□□ -2.16
DDR48YMR173W YNL095CP53932 642 aa1.58□□□□□ -2.16
DDR48YMR173W MIM1Q08176 113 aa1.58□□□□□ -2.16
DDR48YMR173W NFI1Q12216 726 aa1.58□□□□□ -2.16
DDR48YMR173W MRX4Q12467 430 aa1.58□□□□□ -2.16
DDR48YMR173W NBL1Q3E7Y6 73 aa1.58□□□□□ -2.16
DDR48YMR173W HXT2P23585 541 aa1.57□□□□□ -2.16
DDR48YMR173W YPS1P32329 569 aa1.57□□□□□ -2.16
DDR48YMR173W YHL044WP38727 235 aa1.57□□□□□ -2.16
DDR48YMR173W YER084WP40057 128 aa1.57□□□□□ -2.16
DDR48YMR173W ECO1P43605 281 aa1.57□□□□□ -2.16
DDR48YMR173W AQR1P53943 586 aa1.57□□□□□ -2.16
DDR48YMR173W CDD1Q06549 142 aa1.57□□□□□ -2.16
DDR48YMR173W RDL2Q08742 149 aaKnown RBP1.57□□□□□ -2.16
DDR48YMR173W YPL245WQ12179 454 aaKnown RBP1.57□□□□□ -2.16
DDR48YMR173W YOL163WP0CF20 169 aa1.56□□□□□ -2.16
DDR48YMR173W YBL081WP38180 368 aaKnown RBP1.56□□□□□ -2.16
DDR48YMR173W SIF2P38262 535 aa1.56□□□□□ -2.16
DDR48YMR173W IML3P38265 245 aa1.56□□□□□ -2.16
DDR48YMR173W APE4P38821 490 aa1.56□□□□□ -2.16
DDR48YMR173W CUE3P53137 624 aaKnown RBP1.56□□□□□ -2.16
DDR48YMR173W YLL053CP0CD98 152 aa1.55□□□□□ -2.16
DDR48YMR173W TAL1P15019 335 aaKnown RBP1.55□□□□□ -2.16
DDR48YMR173W MRPL20P22354 195 aaPredicted RBP1.55□□□□□ -2.16
DDR48YMR173W CIN8P27895 1000 aa1.55□□□□□ -2.16
DDR48YMR173W ALP1P38971 573 aa1.55□□□□□ -2.16
DDR48YMR173W EDC2P40023 145 aaPredicted RBP1.55□□□□□ -2.16
DDR48YMR173W FYV8P46949 817 aaKnown RBP1.55□□□□□ -2.16
DDR48YMR173W NBP1P52919 319 aaPredicted RBP1.55□□□□□ -2.16
DDR48YMR173W HCH1P53834 153 aa1.55□□□□□ -2.16
DDR48YMR173W YLR012CQ07927 99 aa1.55□□□□□ -2.16
DDR48YMR173W PML1Q07930 204 aaPredicted RBP1.55□□□□□ -2.16
DDR48YMR173W RGS2Q99188 309 aa1.55□□□□□ -2.16
DDR48YMR173W CBP2P03874 630 aaPredicted RBP1.54□□□□□ -2.16
DDR48YMR173W PRE7P23724 241 aaKnown RBP1.54□□□□□ -2.16
DDR48YMR173W MYO3P36006 1272 aa1.54□□□□□ -2.16
DDR48YMR173W PRP39P39682 629 aaKnown RBP1.54□□□□□ -2.16
DDR48YMR173W BTT1P40314 149 aaPredicted RBP1.54□□□□□ -2.16
DDR48YMR173W YNR066CP53752 436 aa1.54□□□□□ -2.16
DDR48YMR173W YOR283WQ12040 230 aaKnown RBP1.54□□□□□ -2.16
DDR48YMR173W SPO24Q3E752 67 aa1.54□□□□□ -2.16
DDR48YMR173W CDC42P19073 191 aa1.53□□□□□ -2.16
DDR48YMR173W RBK1P25332 333 aa1.53□□□□□ -2.16
DDR48YMR173W SWI3P32591 825 aa1.53□□□□□ -2.16
DDR48YMR173W YEL043WP32618 956 aa1.53□□□□□ -2.16
DDR48YMR173W BLI1P35727 113 aa1.53□□□□□ -2.16
DDR48YMR173W BEM2P39960 2167 aaKnown RBP1.53□□□□□ -2.16
DDR48YMR173W TAF6P53040 516 aa1.53□□□□□ -2.16
DDR48YMR173W YGL114WP53134 725 aa1.53□□□□□ -2.16
DDR48YMR173W PDR16P53860 351 aaKnown RBP1.53□□□□□ -2.16
DDR48YMR173W YNL146WP53906 100 aa1.53□□□□□ -2.16
DDR48YMR173W UBX2Q04228 584 aa1.53□□□□□ -2.16
DDR48YMR173W PSY3Q12318 242 aa1.53□□□□□ -2.16
DDR48YMR173W YAK1P14680 807 aa1.52□□□□□ -2.17
DDR48YMR173W VPH1P32563 840 aaKnown RBP1.52□□□□□ -2.17
DDR48YMR173W CLB6P32943 380 aa1.52□□□□□ -2.17
DDR48YMR173W CAB3P36076 571 aa1.52□□□□□ -2.17
DDR48YMR173W AIM29P36154 155 aa1.52□□□□□ -2.17
DDR48YMR173W NAS2P40555 220 aa1.52□□□□□ -2.17
DDR48YMR173W LIF1P53150 421 aa1.52□□□□□ -2.17
DDR48YMR173W PXR1P53335 271 aaPredicted RBP1.52□□□□□ -2.17
DDR48YMR173W VIK1Q12045 647 aa1.52□□□□□ -2.17
DDR48YMR173W ZWF1P11412 505 aaKnown RBP1.51□□□□□ -2.17
DDR48YMR173W ACB1P31787 87 aa1.51□□□□□ -2.17
DDR48YMR173W SMI1P32566 505 aa1.51□□□□□ -2.17
DDR48YMR173W UIP5P36137 443 aa1.51□□□□□ -2.17
DDR48YMR173W MED6P38782 295 aa1.51□□□□□ -2.17
DDR48YMR173W LIN1P38852 340 aaPredicted RBP1.51□□□□□ -2.17
DDR48YMR173W SYF2P53277 215 aaPredicted RBP1.51□□□□□ -2.17
DDR48YMR173W RVB1Q03940 463 aaKnown RBP1.51□□□□□ -2.17
DDR48YMR173W YDR262WQ12331 272 aa1.51□□□□□ -2.17
DDR48YMR173W PFK27Q12471 397 aaPredicted RBP1.51□□□□□ -2.17
DDR48YMR173W VMA5P31412 392 aaKnown RBP1.5□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 27.4 ms