RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	TRP1	P00912	224 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	HHF1	P02309	103 aa	Known RBP	1.26	□□□□□ -2.21
VPS55	YJR044C	REP1	P03871	373 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	HEM4	P06174	275 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	PRB1	P09232	635 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	PET123	P17558	318 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	FAR1	P21268	830 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	RRT12	P25381	491 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	DCC1	P25559	380 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	URA10	P30402	227 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	DEP1	P31385	405 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	ARO4	P32449	370 aa	Known RBP	1.26	□□□□□ -2.21
VPS55	YJR044C	SDH3	P33421	198 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	MIX23	P38162	196 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	SMF2	P38778	549 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	BIG1	P38813	335 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	SBE22	P38814	852 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	COX15	P40086	486 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	JLP2	P40206	208 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	COA1	P40452	197 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	MSS2	P40990	351 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	RRT5	P43607	289 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	FMP33	P46998	180 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	TIM21	P53220	239 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	OKP1	P53298	406 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	MKC7	P53379	596 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	RRN9	P53437	365 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	BIO4	P53630	237 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	CWC25	P53854	179 aa	Known RBP	1.26	□□□□□ -2.21
VPS55	YJR044C	ARK1	P53974	638 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	OST6	Q03723	332 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	GRX3	Q03835	250 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	SNX41	Q04053	625 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	MYO5	Q04439	1219 aa	Known RBP	1.26	□□□□□ -2.21
VPS55	YJR044C	FSH2	Q05015	223 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	DTD1	Q07648	150 aa	Known RBP	1.26	□□□□□ -2.21
VPS55	YJR044C	ESA1	Q08649	445 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	YRA1	Q12159	226 aa	Known RBP	1.26	□□□□□ -2.21
VPS55	YJR044C	ADF1	Q2V2Q1	113 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	AI5_BETA	Q9ZZX0	354 aa		1.26	□□□□□ -2.21
VPS55	YJR044C	CDC36	P06100	191 aa	Predicted RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	MSF1	P08425	469 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	RPL31A	P0C2H8	113 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	RPL23A	P0CX41	137 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	RPL23B	P0CX42	137 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	RPS18A	P0CX55	146 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	RPS18B	P0CX56	146 aa	Predicted RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	SPS100	P13130	326 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	KSS1	P14681	368 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	FRS2	P15625	503 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	POL30	P15873	258 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	HEM15	P16622	393 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	FUS3	P16892	353 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	STE18	P18852	110 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	COQ1	P18900	473 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	CPR4	P25334	318 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	LDS1	P31379	325 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	NUP2	P32499	720 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	IES6	P32617	166 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	TOA2	P32774	122 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	RPT5	P33297	434 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	CSE1	P33307	960 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	SPO23	P33757	523 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	RPC37	P36121	282 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	SHC1	P39000	512 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	PEX22	P39718	180 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	THO1	P40040	218 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	DDI1	P40087	428 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	PRM5	P40476	318 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	RPL10	P41805	221 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	MOB2	P43563	287 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	YJR012C	P47087	207 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	BIR1	P47134	954 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	MST27	P53176	234 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	COG7	P53195	279 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	CLD1	P53264	445 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	SLT2	Q00772	484 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	YMR226C	Q05016	267 aa	Known RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	RIF2	Q06208	395 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	ALE1	Q08548	619 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	CLP1	Q08685	445 aa	Predicted RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	YGK3	Q12222	375 aa	Predicted RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	SNU23	Q12368	194 aa	Predicted RBP	1.25	□□□□□ -2.21
VPS55	YJR044C	YOS9	Q99220	542 aa		1.25	□□□□□ -2.21
VPS55	YJR044C	TDH2	P00358	332 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	COX2	P00410	251 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	ATP6	P00854	259 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	RPS14A	P06367	137 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	MATALPHA1	P0CY06	175 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	HMLALPHA1	P0CY07	175 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	DAL81	P21657	970 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	MRPL20	P22354	195 aa	Predicted RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	MIR1	P23641	311 aa	Known RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	IFM1	P25038	676 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	RNA15	P25299	296 aa	Predicted RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	1.24	□□□□□ -2.21	not detected
VPS55	YJR044C	ZIP1	P31111	875 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	PHA2	P32452	334 aa		1.24	□□□□□ -2.21
VPS55	YJR044C	SPT4	P32914	102 aa	Predicted RBP	1.24	□□□□□ -2.21
VPS55	YJR044C	PRS4	P38063	326 aa	Predicted RBP	1.24	□□□□□ -2.21

Retrieved 100 of 5,963 RNA–protein pairs in 48.5 ms