RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 KRT8P05787 483 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 EPHB2P29323 1055 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 MRPS15P82914 257 aaKnown RBP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 FCHO2Q0JRZ9 810 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 LRRC14Q15048 493 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 TMEM266Q2M3C6 531 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 CLEC4GQ6UXB4 293 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 FRA10AC1Q70Z53 315 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 CCDC25Q86WR0 208 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 MCF2L2Q86YR7 1114 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 ZBED8Q8IZ13 594 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 U2AF1L4Q8WU68 220 aaKnown RBP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 ATXN2LQ8WWM7 1075 aaKnown RBP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 NLRP7Q8WX94 980 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 EFHD2Q96C19 240 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 TSNARE1Q96NA8 513 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 RUNDC3BQ96NL0 473 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 SPOCK3Q9BQ16 436 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 MRPL1Q9BYD6 325 aaKnown RBP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 SLC12A5Q9H2X9 1139 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 CCDC177Q9NQR7 707 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 USP40Q9NVE5 1235 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 DDX56Q9NY93 547 aaKnown RBP6.12□□□□□ -1.43
SCN1A-216ENST00000637968 TSPYL4Q9UJ04 414 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 PNMA3Q9UL41 463 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 AK5Q9Y6K8 562 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 PIK3R4Q99570 1358 aa6.12□□□□□ -1.43
SCN1A-216ENST00000637968 KCNJ18B7U540 433 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 KRIT1O00522 736 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 POLR2DO15514 142 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PRPF3O43395 683 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 TMCC2O75069 709 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ZPR1O75312 459 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ERVK-24P63145 666 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 KCNJ12Q14500 433 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PPP2R5BQ15173 497 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 RASA2Q15283 850 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PPP2R5EQ16537 467 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PIAS4Q8N2W9 510 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ENDOVQ8N8Q3 282 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 TRPC4APQ8TEL6 797 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 FAM161BQ96MY7 647 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SEZ6LQ9BYH1 1024 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 GBA3Q9H227 469 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 LRMDAQ9H2I8 198 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 EHD1Q9H4M9 534 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 NHEJ1Q9H9Q4 299 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 EMC3Q9P0I2 261 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PCSK1NQ9UHG2 260 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 DBNLQ9UJU6 430 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 EIF2AK4Q9P2K8 1649 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 KDM6AO15550 1401 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SH3PXD2BA1X283 911 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PIK3CDO00329 1044 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PDE2AO00408 941 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 GYPCP04921 128 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 KRT3P12035 628 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 BCAP31P51572 246 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 POLGP54098 1239 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 GJA9P57773 515 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 THOC5Q13769 683 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SLC39A14Q15043 492 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 VWA3BQ502W6 1294 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ZNF530Q6P9A1 599 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ANKK1Q8NFD2 765 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 NCSTNQ92542 709 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SNF8Q96H20 258 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 AIFM3Q96NN9 605 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 MRPL9Q9BYD2 267 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 UBN1Q9NPG3 1134 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ATP8A2Q9NTI2 1148 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 AIPL1Q9NZN9 384 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 UVRAGQ9P2Y5 699 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SEPT3Q9UH03 358 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PCDHGA3Q9Y5H0 932 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 TRAPPC8Q9Y2L5 1435 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 UMODL1Q5DID0 1318 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ARHGAP42A6NI28 874 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 KCNK3O14649 394 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 KMOO15229 486 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PGM3O95394 542 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 CRYZL1O95825 349 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 GLI1P08151 1106 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 HMOX1P09601 288 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 IL32P24001 234 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SLC1A1P43005 524 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SLCO1A2P46721 670 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 POU5F1Q01860 360 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 CYP27A1Q02318 531 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PAK1Q13153 545 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SLC9C2Q5TAH2 1124 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 TTC23LQ6PF05 361 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 NUDCD3Q8IVD9 361 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 BRSK2Q8IWQ3 736 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 GLMNQ92990 594 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 RNF25Q96BH1 459 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 CHP1Q99653 195 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 NUP85Q9BW27 656 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms