RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 RARRES1P49788 294 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 ALDH5A1P51649 535 aaPredicted RBP20.05■□□□□ 0.8
CLN3-263ENST00000637871 AMPD2Q01433 879 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 CKAP4Q07065 602 aaKnown RBP20.05■□□□□ 0.8
CLN3-263ENST00000637871 ARHGEF6Q15052 776 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 OTUD6AQ7L8S5 288 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 CTAGE6Q86UF2 777 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 CTAGE4Q8IX94 777 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 FAM186BQ8IYM0 893 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 HVCN1Q96D96 273 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 BORCS6Q96GS4 357 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 ALS2CR12Q96Q35 445 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 GANQ9H2C0 597 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 C17orf75Q9HAS0 396 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 OGFRQ9NZT2 677 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 WRAP73Q9P2S5 460 aaPredicted RBP20.05■□□□□ 0.8
CLN3-263ENST00000637871 PTPN22Q9Y2R2 807 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 BRCA2P51587 3418 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 ADCY3O60266 1144 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 MYCLP12524 364 aaPredicted RBP20.05■□□□□ 0.8
CLN3-263ENST00000637871 PLS3P13797 630 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 NMT1P30419 496 aaKnown RBP20.05■□□□□ 0.8
CLN3-263ENST00000637871 CYP2C19P33261 490 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 MAPK7Q13164 816 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 ASIC2Q16515 512 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 HGSNATQ68CP4 663 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 TRAPPC11Q7Z392 1133 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 CCDC155Q8N6L0 562 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 INPP4AQ96PE3 977 aaPredicted RBP20.05■□□□□ 0.8
CLN3-263ENST00000637871 ACCSQ96QU6 501 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 PRDM10Q9NQV6 1147 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLN3-263ENST00000637871 JRKLQ9Y4A0 524 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 SAR1BQ9Y6B6 198 aa20.05■□□□□ 0.8
CLN3-263ENST00000637871 V9GYY5 206 aaPredicted RBP20.05■□□□□ 0.8
CLN3-263ENST00000637871 A0A0U1RQJ8 604 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 GFPT2O94808 682 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 SCP2P22307 547 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 YWHABP31946 246 aaKnown RBP20.04■□□□□ 0.8
CLN3-263ENST00000637871 GNPTABQ3T906 1256 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 KLHDC7AQ5VTJ3 777 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 FBXO38Q6PIJ6 1188 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 SH3TC2Q8TF17 1288 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 ATRIPQ8WXE1 791 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 SLC35C1Q96A29 364 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 PCDHA10Q9Y5I2 948 aa20.04■□□□□ 0.8
CLN3-263ENST00000637871 SFI1A8K8P3 1242 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 DDX39AO00148 427 aaKnown RBP20.03■□□□□ 0.8
CLN3-263ENST00000637871 N4BP1O75113 896 aaKnown RBP20.03■□□□□ 0.8
CLN3-263ENST00000637871 CCDC172P0C7W6 258 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 RFX1P22670 979 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 IRF5Q13568 498 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 BMS1Q14692 1282 aaKnown RBP20.03■□□□□ 0.8
CLN3-263ENST00000637871 TDRD12Q587J7 1177 aaKnown RBP20.03■□□□□ 0.8
CLN3-263ENST00000637871 IQCEQ6IPM2 695 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 EEPD1Q7L9B9 569 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 SYCP3Q8IZU3 236 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 DNERQ8NFT8 737 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 ATP6V0A1Q93050 837 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 NLRC4Q9NPP4 1024 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 AGPAT3Q9NRZ7 376 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 DDX41Q9UJV9 622 aaKnown RBP20.03■□□□□ 0.8
CLN3-263ENST00000637871 EXOC7Q9UPT5 735 aa20.03■□□□□ 0.8
CLN3-263ENST00000637871 P4HA2O15460 535 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 UCHL3P15374 230 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 PON1P27169 355 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 PRKCIP41743 596 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 KLHL30Q0D2K2 578 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 BRD3Q15059 726 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 SLC18A3Q16572 532 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 PRAMEF19Q5SWL8 479 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 TMCO3Q6UWJ1 677 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 ARMCX2Q7L311 632 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 VPS36Q86VN1 386 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 SPAG5Q96R06 1193 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 LACRTQ9GZZ8 138 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 SLC5A4Q9NY91 659 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 ZMYM2Q9UBW7 1377 aa20.02■□□□□ 0.8
CLN3-263ENST00000637871 BTNL10A8MVZ5 291 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 ZBTB39O15060 712 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 CLIC2O15247 247 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 MYCP01106 439 aaPredicted RBP20.02■□□□□ 0.79
CLN3-263ENST00000637871 GLIPR1L2Q4G1C9 344 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 TEX35Q5T0J7 233 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 TCERG1LQ5VWI1 586 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 DAW1Q8N136 415 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 LRRN4CLQ8ND94 238 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 TINF2Q9BSI4 451 aa20.02■□□□□ 0.79
CLN3-263ENST00000637871 ZNF263O14978 683 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 ABL1P00519 1130 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 PSAPP07602 524 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 KRT13P13646 458 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 MCM3P25205 808 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 SMTNP53814 917 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 PRMT2P55345 433 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 MCCD1P59942 119 aaPredicted RBP20.01■□□□□ 0.79
CLN3-263ENST00000637871 GTF2BQ00403 316 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 CYP27A1Q02318 531 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 CETN1Q12798 172 aa20.01■□□□□ 0.79
CLN3-263ENST00000637871 DCAF17Q5H9S7 520 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms