RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 K7ERI5 159 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 N4BP3O15049 544 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 CLIC2O15247 247 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 SMIM10L2AP0DMW4 78 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 SMIM10L2BP0DMW5 78 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 GRK4P32298 578 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 MARSP56192 900 aaKnown RBP12.91□□□□□ -0.34
CLN6-223ENST00000637823 IRX5P78411 483 aaPredicted RBP12.91□□□□□ -0.34
CLN6-223ENST00000637823 POU5F1BQ06416 359 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 STRN3Q13033 797 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 DRP2Q13474 957 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 CAPSQ13938 189 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 MARCH8Q5T0T0 291 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 FRMD5Q7Z6J6 570 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 C12orf56Q8IXR9 622 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 EEF2KMTQ96G04 330 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 KIFC3Q9BVG8 833 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 C2orf40Q9H1Z8 148 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 VPS16Q9H269 839 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 XPNPEP3Q9NQH7 507 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 AGPAT3Q9NRZ7 376 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 SETD4Q9NVD3 440 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 TAB2Q9NYJ8 693 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 TRIM17Q9Y577 477 aa12.91□□□□□ -0.34
CLN6-223ENST00000637823 ADGRA3Q8IWK6 1321 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 FRMPD3Q5JV73 1810 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 MYADML2A6NDP7 307 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 SLC16A3O15427 465 aaKnown RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 MSCO60682 206 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 ADAMTS4O75173 837 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 PGK1P00558 417 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 INHAP05111 366 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 SRGAP2CP0DJJ0 459 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 GNAT1P11488 350 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 PRKCSHP14314 528 aaPredicted RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 CST5P28325 142 aaPredicted RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 CLCN3P51790 818 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 CDC42EP1Q00587 391 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 MAN2A1Q16706 1144 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 CCDC40Q4G0X9 1142 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 CDCA2Q69YH5 1023 aaPredicted RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 TAS1R3Q7RTX0 852 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 RHPN2Q8IUC4 686 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 PCSK9Q8NBP7 692 aaKnown RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 SPC24Q8NBT2 197 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 KLHDC9Q8NEP7 349 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 LMBR1Q8WVP7 490 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 NOC4LQ9BVI4 516 aaKnown RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 METTL14Q9HCE5 456 aaKnown RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 HMX1Q9NP08 348 aaPredicted RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 INTS13Q9NVM9 706 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 IMPACTQ9P2X3 320 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 DDX20Q9UHI6 824 aaKnown RBP12.9□□□□□ -0.34
CLN6-223ENST00000637823 TSKSQ9UJT2 592 aa12.9□□□□□ -0.34
CLN6-223ENST00000637823 MBLAC1A4D2B0 266 aaPredicted RBP12.89□□□□□ -0.35
CLN6-223ENST00000637823 PIGRP01833 764 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 PTMAP06454 111 aaKnown RBP12.89□□□□□ -0.35
CLN6-223ENST00000637823 EPB41P11171 864 aaKnown RBP12.89□□□□□ -0.35
CLN6-223ENST00000637823 PSMC2P35998 433 aaKnown RBP12.89□□□□□ -0.35
CLN6-223ENST00000637823 CHMP4BP1P59074 171 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 PTENP60484 403 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 ADAM17P78536 824 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 PPP2R3AQ06190 1150 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 NFRKBQ6P4R8 1299 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 VSTM4Q8IW00 320 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 ZBTB8OSQ8IWT0 167 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 DNAJC5GQ8N7S2 189 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 C7orf31Q8N865 590 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 RNF149Q8NC42 400 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 MAP7D2Q96T17 732 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 MKNK1Q9BUB5 465 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 NFKBIZQ9BYH8 718 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 IKZF4Q9H2S9 585 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 ARMCX3Q9UH62 379 aaPredicted RBP12.89□□□□□ -0.35
CLN6-223ENST00000637823 FRMD4BQ9Y2L6 1034 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 PTPN22Q9Y2R2 807 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 PTCH2Q9Y6C5 1203 aa12.89□□□□□ -0.35
CLN6-223ENST00000637823 SMIM35A0A1B0GVV1 85 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 C17orf102A2RUQ5 167 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 LGALS16A8MUM7 142 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 ANKRD63C9JTQ0 380 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 MAPK13O15264 365 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 TEX33O43247 280 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 GARTP22102 1010 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 HOXC8P31273 242 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 PHKA2P46019 1235 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 CYP2J2P51589 502 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 UBXN1Q04323 297 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 HSP90AA2PQ14568 343 aaPredicted RBP12.88□□□□□ -0.35
CLN6-223ENST00000637823 KCNA10Q16322 511 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 VWA3BQ502W6 1294 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 MIIPQ5JXC2 388 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 CEP135Q66GS9 1140 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 SLFN12LQ6IEE8 588 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 CCSAPQ6IQ19 270 aaPredicted RBP12.88□□□□□ -0.35
CLN6-223ENST00000637823 ARMCX5Q6P1M9 558 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 TMC6Q7Z403 805 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 RNF180Q86T96 592 aa12.88□□□□□ -0.35
CLN6-223ENST00000637823 IFNLR1Q8IU57 520 aaPredicted RBP12.88□□□□□ -0.35
CLN6-223ENST00000637823 TRIM59Q8IWR1 403 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms