RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PRPHP41219 470 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 KCNQ1P51787 676 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 RILPL1Q5EBL4 403 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 LARP1BQ659C4 914 aaKnown RBP21.4■■□□□ 1.02
CLN3-260ENST00000637578 TWF2Q6IBS0 349 aaKnown RBP21.4■■□□□ 1.02
CLN3-260ENST00000637578 COLGALT1Q8NBJ5 622 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 SPRYD3Q8NCJ5 442 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 ASAP3Q8TDY4 903 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 RSPH1Q8WYR4 309 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 NFKBIZQ9BYH8 718 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 UBE2ZQ9H832 354 aaPredicted RBP21.4■■□□□ 1.02
CLN3-260ENST00000637578 FAM105AQ9NUU6 356 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 MYO7AQ13402 2215 aa21.39■■□□□ 1.02
CLN3-260ENST00000637578 GLRA2P23416 452 aa21.39■■□□□ 1.01
CLN3-260ENST00000637578 RAB27AP51159 221 aa21.39■■□□□ 1.01
CLN3-260ENST00000637578 CSPP1Q1MSJ5 1256 aa21.39■■□□□ 1.01
CLN3-260ENST00000637578 HAUS3Q68CZ6 603 aa21.39■■□□□ 1.01
CLN3-260ENST00000637578 MCTP1Q6DN14 999 aa21.39■■□□□ 1.01
CLN3-260ENST00000637578 POTEGQ6S5H5 508 aa21.39■■□□□ 1.01
CLN3-260ENST00000637578 LRWD1Q9UFC0 647 aa21.39■■□□□ 1.01
CLN3-260ENST00000637578 LAG3P18627 525 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 UBE3AQ05086 875 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 CAPSQ13938 189 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 TFDP1Q14186 410 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 IL17AQ16552 155 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 ECM1Q16610 540 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 ABI1Q8IZP0 508 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 LRRC43Q8N309 656 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 RNF169Q8NCN4 708 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 ADAMTS19Q8TE59 1207 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 CCDC43Q96MW1 224 aaKnown RBP21.38■■□□□ 1.01
CLN3-260ENST00000637578 STK24Q9Y6E0 443 aa21.38■■□□□ 1.01
CLN3-260ENST00000637578 H3BQV1 296 aa21.37■■□□□ 1.01
CLN3-260ENST00000637578 NCK2O43639 380 aa21.37■■□□□ 1.01
CLN3-260ENST00000637578 USO1O60763 962 aaKnown RBP21.37■■□□□ 1.01
CLN3-260ENST00000637578 UBXN11Q5T124 520 aa21.37■■□□□ 1.01
CLN3-260ENST00000637578 SPOUT1Q5T280 376 aaKnown RBP21.37■■□□□ 1.01
CLN3-260ENST00000637578 MRPL10Q7Z7H8 261 aaKnown RBP21.37■■□□□ 1.01
CLN3-260ENST00000637578 MCPH1Q8NEM0 835 aa21.37■■□□□ 1.01
CLN3-260ENST00000637578 HELQQ8TDG4 1101 aa21.37■■□□□ 1.01
CLN3-260ENST00000637578 POF1BQ8WVV4 589 aa21.37■■□□□ 1.01
CLN3-260ENST00000637578 PABPC5Q96DU9 382 aaKnown RBP21.37■■□□□ 1.01
CLN3-260ENST00000637578 FGF18O76093 207 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 PDCP20941 246 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 PLCB3Q01970 1234 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 CTC1Q2NKJ3 1217 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 LEXMQ3ZCV2 418 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 POLR3FQ9H1D9 316 aaPredicted RBP21.36■■□□□ 1.01
CLN3-260ENST00000637578 PCDHB2Q9Y5E7 798 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 ATG2AQ2TAZ0 1938 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 TSPAN1O60635 241 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 CYP11B2P19099 503 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 AXLP30530 894 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 CCT6AP40227 531 aaKnown RBP21.36■■□□□ 1.01
CLN3-260ENST00000637578 ATP2C1P98194 919 aaPredicted RBP21.36■■□□□ 1.01
CLN3-260ENST00000637578 MBTD1Q05BQ5 628 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 HYAL1Q12794 435 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 AMHR2Q16671 573 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 PADI6Q6TGC4 694 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 MRPL9Q9BYD2 267 aaKnown RBP21.36■■□□□ 1.01
CLN3-260ENST00000637578 RAB34Q9BZG1 259 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 GPRC5CQ9NQ84 441 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 TSHZ2Q9NRE2 1034 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 LZTS1Q9Y250 596 aa21.36■■□□□ 1.01
CLN3-260ENST00000637578 MEIS3P2A8K0S8 358 aa21.35■■□□□ 1.01
CLN3-260ENST00000637578 SYT1P21579 422 aa21.35■■□□□ 1.01
CLN3-260ENST00000637578 IRS1P35568 1242 aa21.35■■□□□ 1.01
CLN3-260ENST00000637578 KCNT2Q6UVM3 1135 aa21.35■■□□□ 1.01
CLN3-260ENST00000637578 LPPQ93052 612 aa21.35■■□□□ 1.01
CLN3-260ENST00000637578 MUC3AQ02505 3323 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 OFD1O75665 1012 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 KCNA5P22460 613 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 LTBRP36941 435 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 ANP32AP39687 249 aaKnown RBP21.34■■□□□ 1.01
CLN3-260ENST00000637578 DTHD1Q6ZMT9 781 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 THNSL1Q8IYQ7 743 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.34■■□□□ 1.01
CLN3-260ENST00000637578 PGBD4Q96DM1 585 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 MMTAG2Q9BU76 263 aaKnown RBP21.34■■□□□ 1.01
CLN3-260ENST00000637578 KIAA1024Q9UPX6 916 aa21.34■■□□□ 1.01
CLN3-260ENST00000637578 VPS37CA5D8V6 355 aaPredicted RBP21.33■■□□□ 1.01
CLN3-260ENST00000637578 ARHGEF35A5YM69 484 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 INO80B-WBP1J3KQ70 363 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 FSCN2O14926 492 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 ERLIN2O94905 339 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 PPM1AP35813 382 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 CDCA2Q69YH5 1023 aaPredicted RBP21.33■■□□□ 1.01
CLN3-260ENST00000637578 GLB1LQ6UWU2 654 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 AGMOQ6ZNB7 445 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 CCDC51Q96ER9 411 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 ZNF558Q96NG5 402 aa21.33■■□□□ 1.01
CLN3-260ENST00000637578 UHRF1Q96T88 793 aaPredicted RBP21.33■■□□□ 1.01
CLN3-260ENST00000637578 NCLP19338 710 aaKnown RBP21.32■■□□□ 1
CLN3-260ENST00000637578 ERVFC1P60507 584 aa21.32■■□□□ 1
CLN3-260ENST00000637578 NOMO2Q5JPE7 1267 aa21.32■■□□□ 1
CLN3-260ENST00000637578 ARL6IP4Q66PJ3 421 aaKnown RBP21.32■■□□□ 1
CLN3-260ENST00000637578 PDE12Q6L8Q7 609 aaKnown RBP21.32■■□□□ 1
CLN3-260ENST00000637578 NOTUMQ6P988 496 aa21.32■■□□□ 1
CLN3-260ENST00000637578 MAEAQ7L5Y9 396 aa21.32■■□□□ 1
CLN3-260ENST00000637578 SMG8Q8ND04 991 aaKnown RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms