RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 VWA3BQ502W6 1294 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 MAP3K21Q5TCX8 1036 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 MTHFD1LQ6UB35 978 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 MKNK1Q9BUB5 465 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 TMEM134Q9H6X4 195 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 RRN3P2A6NIE6 340 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 TISP43B9A030 160 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 MYL3P08590 195 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 CASP4P49662 377 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 CLCN3P51790 818 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 TBX2Q13207 712 aaPredicted RBP20.19■□□□□ 0.82
CLN3-254ENST00000637050 MFSD10Q14728 455 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 KIAA0753Q2KHM9 967 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 MARCH8Q5T0T0 291 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 CDCA2Q69YH5 1023 aaPredicted RBP20.19■□□□□ 0.82
CLN3-254ENST00000637050 ITIH6Q6UXX5 1313 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 METTL13Q8N6R0 699 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 RAET1EQ8TD07 263 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 ZBTB10Q96DT7 871 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 NDST4Q9H3R1 872 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 METTL14Q9HCE5 456 aaKnown RBP20.19■□□□□ 0.82
CLN3-254ENST00000637050 A0A1W2PQC6 194 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 ASAP2O43150 1006 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 KPNA6O60684 536 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 RARBP10826 455 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 EPB41P11171 864 aaKnown RBP20.18■□□□□ 0.82
CLN3-254ENST00000637050 CCND3P30281 292 aaPredicted RBP20.18■□□□□ 0.82
CLN3-254ENST00000637050 PSMC2P35998 433 aaKnown RBP20.18■□□□□ 0.82
CLN3-254ENST00000637050 PSEN2P49810 448 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 PRMT2P55345 433 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 GSDMDP57764 484 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 PURAQ00577 322 aaKnown RBP20.18■□□□□ 0.82
CLN3-254ENST00000637050 CEP135Q66GS9 1140 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 BORCS6Q96GS4 357 aa20.18■□□□□ 0.82
CLN3-254ENST00000637050 ARMCX3Q9UH62 379 aaPredicted RBP20.18■□□□□ 0.82
CLN3-254ENST00000637050 PHLPP2Q6ZVD8 1323 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 NRCAMQ92823 1304 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 MYADML2A6NDP7 307 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 ANKRD63C9JTQ0 380 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 K7ERI5 159 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 PES1O00541 588 aaKnown RBP20.17■□□□□ 0.82
CLN3-254ENST00000637050 C6orf222P0C671 652 aaPredicted RBP20.17■□□□□ 0.82
CLN3-254ENST00000637050 SMIM10L2AP0DMW4 78 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 SMIM10L2BP0DMW5 78 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 CYP2J2P51589 502 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 EFNA5P52803 228 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 STRN3Q13033 797 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 SLC39A4Q6P5W5 647 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 RHPN2Q8IUC4 686 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 CBWD1Q9BRT8 395 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 KATNAL1Q9BW62 490 aa20.17■□□□□ 0.82
CLN3-254ENST00000637050 PIGRP01833 764 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 ADSSP30520 456 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 MAP2K1Q02750 393 aaPredicted RBP20.16■□□□□ 0.82
CLN3-254ENST00000637050 TFDP1Q14186 410 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 ARMCX5Q6P1M9 558 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 RNF149Q8NC42 400 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 LMBR1Q8WVP7 490 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 ERGIC2Q96RQ1 377 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 SPC25Q9HBM1 224 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 SETD4Q9NVD3 440 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 FRMD4BQ9Y2L6 1034 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLN3-254ENST00000637050 EXOC3O60645 756 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 ADAMTS4O75173 837 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 PGK1P00558 417 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 GJB1P08034 283 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 SRGAP2CP0DJJ0 459 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 TMOD1P28289 359 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 PPP2R3AQ06190 1150 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 POU5F1BQ06416 359 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 GNASQ5JWF2 1037 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 FKBP15Q5T1M5 1219 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 FAM186BQ8IYM0 893 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 CCDC113Q9H0I3 377 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 C2orf40Q9H1Z8 148 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 HSPBP1Q9NZL4 362 aa20.16■□□□□ 0.82
CLN3-254ENST00000637050 MBLAC1A4D2B0 266 aaPredicted RBP20.15■□□□□ 0.82
CLN3-254ENST00000637050 HNRNPDLO14979 420 aaKnown RBP20.15■□□□□ 0.82
CLN3-254ENST00000637050 HSPA6P17066 643 aa20.15■□□□□ 0.82
CLN3-254ENST00000637050 ZBTB8OSQ8IWT0 167 aa20.15■□□□□ 0.82
CLN3-254ENST00000637050 XXYLT1Q8NBI6 393 aa20.15■□□□□ 0.82
CLN3-254ENST00000637050 NFKBIZQ9BYH8 718 aa20.15■□□□□ 0.82
CLN3-254ENST00000637050 PCIF1Q9H4Z3 704 aa20.15■□□□□ 0.82
CLN3-254ENST00000637050 XPNPEP3Q9NQH7 507 aa20.15■□□□□ 0.82
CLN3-254ENST00000637050 MAPK13O15264 365 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 GARTP22102 1010 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 PTENP60484 403 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 ADAM17P78536 824 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 ARID5BQ14865 1188 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 SLAIN1Q8ND83 568 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 CACTINQ8WUQ7 758 aaKnown RBP20.14■□□□□ 0.81
CLN3-254ENST00000637050 BICD1Q96G01 975 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 KCNF1Q9H3M0 494 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.14■□□□□ 0.81
CLN3-254ENST00000637050 STYXL1Q9Y6J8 313 aa20.14■□□□□ 0.81
CLN3-254ENST00000637050 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.14■□□□□ 0.81
CLN3-254ENST00000637050 EVPLQ92817 2033 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 ZEB2O60315 1214 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 HOXC8P31273 242 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms