RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 DYDC2Q96IM9 177 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 SPZ1Q9BXG8 430 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 PNMA6FA0A0J9YX94 578 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 RASA1P20936 1047 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 SLC8A3P57103 927 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 THEMIS2Q5TEJ8 643 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 FRMD5Q7Z6J6 570 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 TMEM237Q96Q45 408 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 SH2D3AQ9BRG2 576 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 USP40Q9NVE5 1235 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 GOLGA8RI6L899 631 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 GYG2O15488 501 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 PHF2O75151 1096 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 AKAP3O75969 853 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 CCNHP51946 323 aaPredicted RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 SPARCL1Q14515 664 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 SLC30A5Q8TAD4 765 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 GRK7Q8WTQ7 553 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 ATG4AQ8WYN0 398 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 NAF1Q96HR8 494 aaKnown RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 NUP85Q9BW27 656 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 ZC3H12CQ9C0D7 883 aaKnown RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 PARVGQ9HBI0 331 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 ZFP69BQ9UJL9 534 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 NWD1Q149M9 1564 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 FOXO6A8MYZ6 492 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 DNAJC8O75937 253 aaPredicted RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 GHRP10912 638 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 ESRRAP11474 423 aaPredicted RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 KLC1Q07866 573 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 ITIH4Q14624 930 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 SPRED3Q2MJR0 410 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 EAPPQ56P03 285 aaPredicted RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 ANKRD20A2Q5SQ80 823 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 ANKRD20A1Q5TYW2 823 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 SLFN13Q68D06 897 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 DCUN1D2Q6PH85 259 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 PALM2Q8IXS6 379 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 HIPK4Q8NE63 616 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 ZNF564Q8TBZ8 553 aaPredicted RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 INTS2Q9H0H0 1204 aaKnown RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 SYNCQ9H7C4 482 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 SRP68Q9UHB9 627 aaKnown RBP11.83□□□□□ -0.52
CLN3-244ENST00000636147 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLN3-244ENST00000636147 NR2E1Q9Y466 385 aa11.83□□□□□ -0.52
CLN3-244ENST00000636147 DDX3XO00571 662 aaKnown RBP eCLIP11.82□□□□□ -0.523e-8■■■□□ 15.1
CLN3-244ENST00000636147 AP1G2O75843 785 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 PLS3P13797 630 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 RANBP1P43487 201 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 ADGRF4Q8IZF3 695 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 CCT6BQ92526 530 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 MMTAG2Q9BU76 263 aaKnown RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 CARD9Q9H257 536 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 A1CFQ9NQ94 594 aaKnown RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 AIPL1Q9NZN9 384 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 STOML1Q9UBI4 398 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 TTLL1O95922 423 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 CYP11B2P19099 503 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 CDR2Q01850 454 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 XRCC4Q13426 336 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 SLC30A10Q6XR72 485 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 NT5DC3Q86UY8 548 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 TEKT4Q8WW24 435 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 TTC1Q99614 292 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 FGFBP2Q9BYJ0 223 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 CTNNAL1Q9UBT7 734 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 PALM3A6NDB9 673 aaPredicted RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 SSTR3P32745 418 aaPredicted RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 RPL21P46778 160 aaKnown RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 MXI1P50539 228 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 DYNLT1P63172 113 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 BZW1Q7L1Q6 419 aaKnown RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 FBXO11Q86XK2 927 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 ARHGAP24Q8N264 748 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 SCFD2Q8WU76 684 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 PIK3R5Q8WYR1 880 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 METTL5Q9NRN9 209 aaKnown RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 GGA2Q9UJY4 613 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 GGA1Q9UJY5 639 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 DIS3Q9Y2L1 958 aaKnown RBP11.82□□□□□ -0.52
CLN3-244ENST00000636147 SPATA31A3Q5VYP0 1347 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 TNS3Q68CZ2 1445 aa11.82□□□□□ -0.52
CLN3-244ENST00000636147 DCTN3O75935 186 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 GSTA1P08263 222 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 KRT16P08779 473 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 GNAT1P11488 350 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 TXNRD3Q86VQ6 643 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 COL23A1Q86Y22 540 aaPredicted RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 NEDD1Q8NHV4 660 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 MAIP1Q8WWC4 291 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 DNAJC9Q8WXX5 260 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 RNF25Q96BH1 459 aaPredicted RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 FNBP1Q96RU3 617 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 KLF6Q99612 283 aaPredicted RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 AGPAT1Q99943 283 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 TCHPQ9BT92 498 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 GLT8D2Q9H1C3 349 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 CDC42EP4Q9H3Q1 356 aaKnown RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 NPHS2Q9NP85 383 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 ZFATQ9P243 1243 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms