RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 GPR88Q9GZN0 384 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 SEPT9Q9UHD8 586 aaPredicted RBP23.16■■□□□ 1.3
LIME1-210ENST00000621325 RAB21Q9UL25 225 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 TBX20Q9UMR3 447 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 F8VZ95 297 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 TBC1D8O95759 1140 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 MYCNP04198 464 aaPredicted RBP23.16■■□□□ 1.3
LIME1-210ENST00000621325 ADSSP30520 456 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 DRAP1Q14919 205 aaPredicted RBP23.16■■□□□ 1.3
LIME1-210ENST00000621325 CYFIP1Q7L576 1253 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 LMO3Q8TAP4 145 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 LUC7LQ9NQ29 371 aaKnown RBP23.16■■□□□ 1.3
LIME1-210ENST00000621325 NAGPAQ9UK23 515 aa23.16■■□□□ 1.3
LIME1-210ENST00000621325 OTOFQ9HC10 1997 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 EVI5O60447 810 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 PALMO75781 387 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 GCLMP48507 274 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 VAMP7P51809 220 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 VSNL1P62760 191 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 DMP1Q13316 513 aaPredicted RBP23.15■■□□□ 1.3
LIME1-210ENST00000621325 STXBP2Q15833 593 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 PHLDB3Q6NSJ2 640 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 SEPT14Q6ZU15 432 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 INTS8Q75QN2 995 aaKnown RBP23.15■■□□□ 1.3
LIME1-210ENST00000621325 OSBPL9Q96SU4 736 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 ARFGAP3Q9NP61 516 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 XPNPEP1Q9NQW7 623 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 SMARCAL1Q9NZC9 954 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 ADGRA3Q8IWK6 1321 aa23.15■■□□□ 1.3
LIME1-210ENST00000621325 DENND3A2RUS2 1198 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 CCDC151A5D8V7 595 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 TULP1O00294 542 aaPredicted RBP23.14■■□□□ 1.3
LIME1-210ENST00000621325 ADRB2P07550 413 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 STAT1P42224 750 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 OLIG1Q8TAK6 271 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 STK33Q9BYT3 514 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 KMT5AQ9NQR1 393 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 EHD2Q9NZN4 543 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 APEX2Q9UBZ4 518 aa23.14■■□□□ 1.3
LIME1-210ENST00000621325 STAM2O75886 525 aa23.14■■□□□ 1.29
LIME1-210ENST00000621325 YBX3P16989 372 aaKnown RBP eCLIP23.14■■□□□ 1.29
LIME1-210ENST00000621325 SOX5P35711 763 aa23.14■■□□□ 1.29
LIME1-210ENST00000621325 CKAP4Q07065 602 aaKnown RBP23.14■■□□□ 1.29
LIME1-210ENST00000621325 ALKBH5Q6P6C2 394 aaKnown RBP23.14■■□□□ 1.29
LIME1-210ENST00000621325 TMEM174Q8WUU8 243 aa23.14■■□□□ 1.29
LIME1-210ENST00000621325 SAAL1Q96ER3 474 aa23.14■■□□□ 1.29
LIME1-210ENST00000621325 DDX3XO00571 662 aaKnown RBP eCLIP23.13■■□□□ 1.295e-9■■□□□ 12.7
LIME1-210ENST00000621325 FTCDO95954 541 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 SMTNP53814 917 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 TUBB4BP68371 445 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 BRD3Q15059 726 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 CBWD2Q8IUF1 395 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 KRT222Q8N1A0 295 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 IWS1Q96ST2 819 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 PAGR1Q9BTK6 254 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 PDLIM7Q9NR12 457 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 CYP26B1Q9NR63 512 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 NENFQ9UMX5 172 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 POTEB2H3BUK9 544 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 EIF3JO75822 258 aaKnown RBP23.13■■□□□ 1.29
LIME1-210ENST00000621325 SUPT20HL2P0C7V6 817 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 FERP16591 822 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 ALDH5A1P51649 535 aaPredicted RBP23.13■■□□□ 1.29
LIME1-210ENST00000621325 C2orf54Q08AI8 447 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 ARHGAP44Q17R89 818 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 NCAPG2Q86XI2 1143 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 RIOX2Q8IUF8 465 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 MAP4K3Q8IVH8 894 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 DNERQ8NFT8 737 aa23.13■■□□□ 1.29
LIME1-210ENST00000621325 PAPPA2Q9BXP8 1791 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 FAM170AA1A519 330 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 ATP4AP20648 1035 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 CNGA1P29973 690 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 LONRF2Q1L5Z9 754 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 MIS18BP1Q6P0N0 1132 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 KIFAP3Q92845 792 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 SPATC1LQ9H0A9 340 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 ST7Q9NRC1 585 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 HYOU1Q9Y4L1 999 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 LOC285556D6RIA3 1793 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 PRLRP16471 622 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 DNA2P51530 1060 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 MTERF2Q49AM1 385 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 C9orf131Q5VYM1 1079 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 SLC39A4Q6P5W5 647 aa23.12■■□□□ 1.29
LIME1-210ENST00000621325 LNX1Q8TBB1 728 aaPredicted RBP23.12■■□□□ 1.29
LIME1-210ENST00000621325 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.12■■□□□ 1.291e-6■■■■■ 94.7
LIME1-210ENST00000621325 GRID2IPA4D2P6 1211 aa23.11■■□□□ 1.29
LIME1-210ENST00000621325 SOWAHBA6NEL2 793 aa23.11■■□□□ 1.29
LIME1-210ENST00000621325 PLA2G4AP47712 749 aa23.11■■□□□ 1.29
LIME1-210ENST00000621325 IREB2P48200 963 aaKnown RBP23.11■■□□□ 1.29
LIME1-210ENST00000621325 NTPCRQ9BSD7 190 aaKnown RBP23.11■■□□□ 1.29
LIME1-210ENST00000621325 TSPYL1Q9H0U9 437 aa23.11■■□□□ 1.29
LIME1-210ENST00000621325 ABCB6Q9NP58 842 aa23.11■■□□□ 1.29
LIME1-210ENST00000621325 PACSIN2Q9UNF0 486 aaPredicted RBP23.11■■□□□ 1.29
LIME1-210ENST00000621325 PCDHGC5Q9Y5F6 944 aa23.11■■□□□ 1.29
LIME1-210ENST00000621325 A0A0G2JLL6 359 aaPredicted RBP23.11■■□□□ 1.29
LIME1-210ENST00000621325 DGAT1O75907 488 aa23.11■■□□□ 1.29
LIME1-210ENST00000621325 PRRT2Q7Z6L0 340 aaPredicted RBP23.11■■□□□ 1.29
LIME1-210ENST00000621325 ARHGEF19Q8IW93 802 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms