RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RFXAPO00287 272 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 FGFR1P11362 822 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 PEX3P56589 373 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 EIF2AQ9BY44 585 aaKnown RBP14.94□□□□□ -0.02
LINC00540-202ENST00000616974 INO80BQ9C086 356 aaPredicted RBP14.94□□□□□ -0.02
LINC00540-202ENST00000616974 NT5C3AQ9H0P0 336 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 CXCL16Q9H2A7 254 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 GOLPH3LQ9H4A5 285 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 PIN4Q9Y237 131 aaKnown RBP14.94□□□□□ -0.02
LINC00540-202ENST00000616974 HES2Q9Y543 173 aa14.94□□□□□ -0.02
LINC00540-202ENST00000616974 MORC2Q9Y6X9 1032 aaPredicted RBP14.94□□□□□ -0.02
LINC00540-202ENST00000616974 COL4A4P53420 1690 aaPredicted RBP14.93□□□□□ -0.02
LINC00540-202ENST00000616974 MYMKA6NI61 221 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 C9IYK1 514 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 CATSPER4Q7RTX7 472 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 ZNF410Q86VK4 478 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 MCPH1Q8NEM0 835 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 TCP11Q8WWU5 503 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 DHX58Q96C10 678 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 JPH2Q9BR39 696 aaPredicted RBP14.93□□□□□ -0.02
LINC00540-202ENST00000616974 FGFBP2Q9BYJ0 223 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 RC3H2Q9HBD1 1191 aaKnown RBP14.93□□□□□ -0.02
LINC00540-202ENST00000616974 TLL1O43897 1013 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 TSPAN1O60635 241 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 CUTAO60888 179 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 NPTX2P47972 431 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 KRT85P78386 507 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 GIT2Q14161 759 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 PAN2Q504Q3 1202 aaKnown RBP14.93□□□□□ -0.02
LINC00540-202ENST00000616974 RRAGBQ5VZM2 374 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 RESP18Q5W5W9 173 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 KCNG4Q8TDN1 519 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 APBB2Q92870 758 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 HPS3Q969F9 1004 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 PPME1Q9Y570 386 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 SQORQ9Y6N5 450 aa14.93□□□□□ -0.02
LINC00540-202ENST00000616974 TDRD15B5MCY1 1934 aaKnown RBP14.93□□□□□ -0.02
LINC00540-202ENST00000616974 PLXNA4Q9HCM2 1894 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 CITO14578 2027 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 DENND3A2RUS2 1198 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 GPR182O15218 404 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 SLC16A4O15374 487 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 POLR2DO15514 142 aaKnown RBP14.92□□□□□ -0.02
LINC00540-202ENST00000616974 ARF4P18085 180 aaPredicted RBP14.92□□□□□ -0.02
LINC00540-202ENST00000616974 MXD4Q14582 209 aaPredicted RBP14.92□□□□□ -0.02
LINC00540-202ENST00000616974 UBXN11Q5T124 520 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 USP38Q8NB14 1042 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 RNF169Q8NCN4 708 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 GLIS3Q8NEA6 775 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 SLC9A7Q96T83 725 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 RNF39Q9H2S5 420 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 RGS18Q9NS28 235 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 AGPAT5Q9NUQ2 364 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 CFAP45Q9UL16 551 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 LINC00271P0C7V0 271 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 SMAD3P84022 425 aaKnown RBP14.92□□□□□ -0.02
LINC00540-202ENST00000616974 GRIN2CQ14957 1233 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 CDCA2Q69YH5 1023 aaPredicted RBP14.92□□□□□ -0.02
LINC00540-202ENST00000616974 TIFAQ96CG3 184 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 DNAJC19Q96DA6 116 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 FIZ1Q96SL8 496 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 ZBED2Q9BTP6 218 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 CCDC113Q9H0I3 377 aa14.92□□□□□ -0.02
LINC00540-202ENST00000616974 GAS2O43903 313 aaKnown RBP14.91□□□□□ -0.02
LINC00540-202ENST00000616974 STAT6P42226 847 aa14.91□□□□□ -0.02
LINC00540-202ENST00000616974 TAP1Q03518 808 aa14.91□□□□□ -0.02
LINC00540-202ENST00000616974 EEF1DP3Q658K8 133 aa14.91□□□□□ -0.02
LINC00540-202ENST00000616974 CCDC169A6NNP5 214 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 B4GALT3O60512 393 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 GADD45BO75293 160 aaPredicted RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 AMHP03971 560 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 RPLP2P05387 115 aaKnown RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 PDIA4P13667 645 aaKnown RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 PFKFB1P16118 471 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 GUCY2CP25092 1073 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 PHKA2P46019 1235 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 NDUFA8P51970 172 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 NUCB2P80303 420 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 TWF2Q6IBS0 349 aaKnown RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 DEFB123Q8N688 67 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 DDX12PQ92771 950 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 GUCD1Q96NT3 240 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 C17orf80Q9BSJ5 609 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 BLZF1Q9H2G9 400 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 MTIF3Q9H2K0 278 aaKnown RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 TBC1D7Q9P0N9 293 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 TTC28Q96AY4 2481 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 LINC01553A4QN01 128 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 TISP43B9A030 160 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 SFPQP23246 707 aaKnown RBP eCLIP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 NMT1P30419 496 aaKnown RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 PBX3P40426 434 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 HTRA4P83105 476 aaPredicted RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 CLLU1OSQ5K130 101 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 SRGAP1Q7Z6B7 1085 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 IFNLR1Q8IU57 520 aaPredicted RBP14.9□□□□□ -0.02
LINC00540-202ENST00000616974 TMEM130Q8N3G9 435 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 ZHX3Q9H4I2 956 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 STK24Q9Y6E0 443 aa14.9□□□□□ -0.02
LINC00540-202ENST00000616974 ASAP2O43150 1006 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms