RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 VSIG1Q86XK7 387 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 MSL3Q8N5Y2 521 aaKnown RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 CAVIN3Q969G5 261 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 PRMT6Q96LA8 375 aaPredicted RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 FGFBP2Q9BYJ0 223 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 OSGEPQ9NPF4 335 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 KCNQ5Q9NR82 932 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 ANAPC5Q9UJX4 755 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 ZNF142P52746 1687 aaPredicted RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 ZNF233A6NK53 670 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 PPP1R11O60927 126 aaPredicted RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 MMEP08473 750 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 ALDH3A1P30838 453 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 CORO7P57737 925 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 KCNA1Q09470 495 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 ZKSCAN8Q15776 578 aaPredicted RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 KRT39Q6A163 491 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 SLC35C1Q96A29 364 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 THAP2Q9H0W7 228 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 HSPBP1Q9NZL4 362 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 TBK1Q9UHD2 729 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 ALG6Q9Y672 507 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 MARF1Q9Y4F3 1742 aaKnown RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 FOXN3O00409 490 aaPredicted RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 POLRMTO00411 1230 aaKnown RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 TMOD1P28289 359 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 ADCY2Q08462 1091 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 KIAA1755Q5JYT7 1200 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 GLG1Q92896 1179 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 GMCL1Q96IK5 515 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 HEMGNQ9BXL5 484 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 TRIM7Q9C029 511 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 AZI2Q9H6S1 392 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 VCPKMTQ9H867 229 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 LCMT1Q9UIC8 334 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 PNMA2Q9UL42 364 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 INTUQ9ULD6 942 aa9.34□□□□□ -0.91
LIG4-204ENST00000611712 ZBTB12Q9Y330 459 aaPredicted RBP9.34□□□□□ -0.91
LIG4-204ENST00000611712 TUBGCP6Q96RT7 1819 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 PFASO15067 1338 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 EML1O00423 815 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 NOP56O00567 594 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 CLTAP09496 248 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ATP2A2P16615 1042 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 LACTBP83111 547 aaPredicted RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 HDLBPQ00341 1268 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 COG2Q14746 738 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 TTLL6Q8N841 843 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 CERKQ8TCT0 537 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ZNF473Q8WTR7 871 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 TRIM11Q96F44 468 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 FAM213AQ9BRX8 229 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 MAK16Q9BXY0 300 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 KCNMB3Q9NPA1 279 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 LRRC4BQ9NT99 713 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 FAM53CQ9NYF3 392 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ADAMTSL3P82987 1691 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 MEIS2O14770 477 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ARP10275 920 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ITGA4P13612 1032 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 YWHABP31946 246 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 MAN1A1P33908 653 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 JAK3P52333 1124 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 DHX34Q14147 1143 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 HHATQ5VTY9 493 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 LRIG3Q6UXM1 1119 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 MMS22LQ6ZRQ5 1243 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ANKRD35Q8N283 1001 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 TAB3Q8N5C8 712 aaPredicted RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 SLC7A3Q8WY07 619 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 EFCC1Q9HA90 598 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ZNF277Q9NRM2 450 aaPredicted RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 KCND2Q9NZV8 630 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ZBTB39O15060 712 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 MEFVO15553 781 aaPredicted RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 PSMC5P62195 406 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ZRSR2Q15696 482 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 ZNF720Q7Z2F6 126 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 SLC30A5Q8TAD4 765 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ACTRT1Q8TDG2 376 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 AGBL1Q96MI9 1066 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 ELAC2Q9BQ52 826 aaKnown RBP9.33□□□□□ -0.92
LIG4-204ENST00000611712 UNC45AQ9H3U1 944 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 AS3MTQ9HBK9 375 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 PCDHGC5Q9Y5F6 944 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 DUOX1Q9NRD9 1551 aa9.33□□□□□ -0.92
LIG4-204ENST00000611712 POC1B-GALNT4F8VUJ3 575 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 F8VZ95 297 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 ATMINO43313 823 aaPredicted RBP9.32□□□□□ -0.92
LIG4-204ENST00000611712 RTN2O75298 545 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 KRT76Q01546 638 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 GABPAQ06546 454 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 MKRN4PQ13434 485 aaPredicted RBP9.32□□□□□ -0.92
LIG4-204ENST00000611712 DCAF15Q66K64 600 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 KCTD17Q8N5Z5 321 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 BBOF1Q8ND07 529 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 C1orf54Q8WWF1 131 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 MXRA8Q9BRK3 442 aa9.32□□□□□ -0.92
LIG4-204ENST00000611712 WNT8AQ9H1J5 351 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms