RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TLDC1Q6P9B6 456 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 SP8Q8IXZ3 490 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 CCDC105Q8IYK2 499 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 BTBD6Q96KE9 485 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 BHMT2Q9H2M3 363 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 JMJD4Q9H9V9 463 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 DNAJC12Q9UKB3 198 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 SRRM3A6NNA2 597 aaPredicted RBP19.8■□□□□ 0.76
UPF1-210ENST00000600689 RASGRF2O14827 1237 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 MRPL12P52815 198 aaKnown RBP19.8■□□□□ 0.76
UPF1-210ENST00000600689 SNX1Q13596 522 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 COL23A1Q86Y22 540 aaPredicted RBP19.8■□□□□ 0.76
UPF1-210ENST00000600689 PIGOQ8TEQ8 1089 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 USP40Q9NVE5 1235 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 BZW2Q9Y6E2 419 aaKnown RBP19.8■□□□□ 0.76
UPF1-210ENST00000600689 CCDC189A1A4V9 331 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 TNFAIP3P21580 790 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 POLD1P28340 1107 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 CRYMQ14894 314 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 C10orf76Q5T2E6 689 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 ZDHHC24Q6UX98 284 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 ERICH1Q86X53 443 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 RASGEF1CQ8N431 466 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 C3orf20Q8ND61 904 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 ZC3H12CQ9C0D7 883 aaKnown RBP19.8■□□□□ 0.76
UPF1-210ENST00000600689 NT5C3AQ9H0P0 336 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 SIX2Q9NPC8 291 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 ZDHHC18Q9NUE0 388 aa19.8■□□□□ 0.76
UPF1-210ENST00000600689 DDX3YO15523 660 aaKnown RBP19.79■□□□□ 0.76
UPF1-210ENST00000600689 EIF3BP55884 814 aaKnown RBP19.79■□□□□ 0.76
UPF1-210ENST00000600689 PTENP60484 403 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 POU5F1Q01860 360 aaKnown RBP19.79■□□□□ 0.76
UPF1-210ENST00000600689 KLRC3Q07444 240 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 DUPD1Q68J44 220 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 CATSPER3Q86XQ3 398 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 SLC35C1Q96A29 364 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 COG5Q9UP83 839 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 TRPC6Q9Y210 931 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 PCDHAC2Q9Y5I4 1007 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 CHMP2AO43633 222 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 KRT16P08779 473 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 NMT1P30419 496 aaKnown RBP19.79■□□□□ 0.76
UPF1-210ENST00000600689 ANKRD31Q8N7Z5 1873 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 RPTORQ8N122 1335 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 UTRNP46939 3433 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 CLGNO14967 610 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 KIAA0391O15091 583 aaKnown RBP19.79■□□□□ 0.76
UPF1-210ENST00000600689 GH1P01241 217 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 MMP13P45452 471 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 TBC1D10BQ4KMP7 808 aaPredicted RBP19.79■□□□□ 0.76
UPF1-210ENST00000600689 DPY19L2P1Q6NXN4 242 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 SLF2Q8IX21 1173 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 ELMO3Q96BJ8 720 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 PWWP2AQ96N64 755 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 RUSC1Q9BVN2 902 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 ADAM33Q9BZ11 813 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 RIOX1Q9H6W3 641 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 ACP6Q9NPH0 428 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 RGL1Q9NZL6 768 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 LTBP1Q14766 1721 aa19.79■□□□□ 0.76
UPF1-210ENST00000600689 ADAMTSL1Q8N6G6 1762 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 CES2O00748 559 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 ZBTB39O15060 712 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 GHRP10912 638 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 GIT2Q14161 759 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 TTC27Q6P3X3 843 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 SAMD1Q6SPF0 538 aaPredicted RBP19.78■□□□□ 0.76
UPF1-210ENST00000600689 FAM47EQ6ZV65 393 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 SLC20A1Q8WUM9 679 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 SLC12A4Q9UP95 1085 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 C15orf41Q9Y2V0 281 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 NQO1P15559 274 aaKnown RBP19.78■□□□□ 0.76
UPF1-210ENST00000600689 NCALDP61601 193 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 RNASELQ05823 741 aaKnown RBP19.78■□□□□ 0.76
UPF1-210ENST00000600689 KIF9Q9HAQ2 790 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 ALG6Q9Y672 507 aa19.78■□□□□ 0.76
UPF1-210ENST00000600689 FAM196BA6NMK8 535 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 CACNB3P54284 484 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 MAPK7Q13164 816 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 USH1GQ495M9 461 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 PIGWQ7Z7B1 504 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 SLFN11Q7Z7L1 901 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 PHLDB2Q86SQ0 1253 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 RFFLQ8WZ73 363 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 PLCD4Q9BRC7 762 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 COA1Q9GZY4 146 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 DBNDD1Q9H9R9 158 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 ARHGEF10LQ9HCE6 1279 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 MTMR4Q9NYA4 1195 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 ZNF219Q9P2Y4 722 aaPredicted RBP19.77■□□□□ 0.76
UPF1-210ENST00000600689 CLSTN1O94985 981 aa19.77■□□□□ 0.76
UPF1-210ENST00000600689 CCDC137Q6PK04 289 aaKnown RBP19.77■□□□□ 0.76
UPF1-210ENST00000600689 EIF1ADQ8N9N8 165 aaKnown RBP19.77■□□□□ 0.76
UPF1-210ENST00000600689 TMEM120BA0PK00 339 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 CALUO43852 315 aaPredicted RBP19.77■□□□□ 0.75
UPF1-210ENST00000600689 TBCAO75347 108 aaKnown RBP19.77■□□□□ 0.75
UPF1-210ENST00000600689 RARAP10276 462 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 NFIAQ12857 509 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 NSMFQ6X4W1 530 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 ZDHHC14Q8IZN3 488 aa19.77■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms