RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SAMM50Q9Y512 469 aa11.45□□□□□ -0.58
TRIM28-210ENST00000597618 CLUHO75153 1309 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 WDR64B1ANS9 1081 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 N4BP1O75113 896 aaKnown RBP11.44□□□□□ -0.58
TRIM28-210ENST00000597618 CYP3A4P08684 503 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 SLC11A1P49279 550 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 RAB27AP51159 221 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 PRKCEQ02156 737 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 SPECC1Q5M775 1068 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 SYNE3Q6ZMZ3 975 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 SGMS1Q86VZ5 419 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 C1orf210Q8IVY1 113 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 SLC44A3Q8N4M1 653 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 CRYGNQ8WXF5 182 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 RSAD2Q8WXG1 361 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 LPPQ93052 612 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 CNTNAP3BQ96NU0 1288 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 CNTNAP3Q9BZ76 1288 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 GBP3Q9H0R5 595 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 WDR6Q9NNW5 1121 aaKnown RBP11.44□□□□□ -0.58
TRIM28-210ENST00000597618 MAN1C1Q9NR34 630 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 ARHGEF3Q9NR81 526 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 SIT1Q9Y3P8 196 aa11.44□□□□□ -0.58
TRIM28-210ENST00000597618 KINO60870 393 aaKnown RBP11.43□□□□□ -0.58
TRIM28-210ENST00000597618 LILRB3O75022 631 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 KRT37O76014 449 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 SSBP05455 408 aaKnown RBP eCLIP11.43□□□□□ -0.58
TRIM28-210ENST00000597618 URODP06132 367 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 ADH1AP07327 375 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 DCNP07585 359 aaKnown RBP11.43□□□□□ -0.58
TRIM28-210ENST00000597618 SDHBP21912 280 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 RSPO4Q2I0M5 234 aaPredicted RBP11.43□□□□□ -0.58
TRIM28-210ENST00000597618 URGCPQ8TCY9 931 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 GPR152Q8TDT2 470 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 BORCS6Q96GS4 357 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 FAM105AQ9NUU6 356 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 DLGAP2Q9P1A6 1054 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 DNAJB4Q9UDY4 337 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 PIN4Q9Y237 131 aaKnown RBP11.43□□□□□ -0.58
TRIM28-210ENST00000597618 SSX2IPQ9Y2D8 614 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 CHD8Q9HCK8 2581 aa11.43□□□□□ -0.58
TRIM28-210ENST00000597618 CCDC195A0A1B0GUA6 201 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 INPPL1O15357 1258 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 ZNF862O60290 1169 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 ZNF623O75123 536 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 CSDE1O75534 798 aaKnown RBP11.42□□□□□ -0.58
TRIM28-210ENST00000597618 OFD1O75665 1012 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 GLUD1P00367 558 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 LONRF3Q496Y0 759 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 JAKMIP3Q5VZ66 844 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 DCLK2Q8N568 766 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 SUMF1Q8NBK3 374 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 PGBD4Q96DM1 585 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 TMEM175Q9BSA9 504 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 LRRC2Q9BYS8 371 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 INO80BQ9C086 356 aaPredicted RBP11.42□□□□□ -0.58
TRIM28-210ENST00000597618 DISC1Q9NRI5 854 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 V9GY48 417 aaPredicted RBP11.42□□□□□ -0.58
TRIM28-210ENST00000597618 CFAP47Q6ZTR5 3102 aa11.42□□□□□ -0.58
TRIM28-210ENST00000597618 MEIS3P2A8K0S8 358 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 SPTLC1O15269 473 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 B4GALT3O60512 393 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 SOD2P04179 222 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 ALDH2P05091 517 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 DNM2P50570 870 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 AK2P54819 239 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 FUT2Q10981 343 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 RTN1Q16799 776 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 ZNF528Q3MIS6 628 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 PRR16Q569H4 304 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 DCLRE1AQ6PJP8 1040 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 APOA5Q6Q788 366 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 ZNF410Q86VK4 478 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 ZNF280BQ86YH2 543 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 REXO1Q8N1G1 1221 aaKnown RBP11.41□□□□□ -0.58
TRIM28-210ENST00000597618 GPR161Q8N6U8 529 aaKnown RBP11.41□□□□□ -0.58
TRIM28-210ENST00000597618 PJA1Q8NG27 643 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 SMG7Q92540 1137 aaKnown RBP11.41□□□□□ -0.58
TRIM28-210ENST00000597618 SHDQ96IW2 340 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 FAM193BQ96PV7 902 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-210ENST00000597618 RPS6KC1Q96S38 1066 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 MYADMQ96S97 322 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 HERC2P3Q9BVR0 1158 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 SLC2A4RGQ9NR83 387 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.41□□□□□ -0.58
TRIM28-210ENST00000597618 KANSL3Q9P2N6 904 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 NCDNQ9UBB6 729 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 FAN1Q9Y2M0 1017 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 CHD6Q8TD26 2715 aa11.41□□□□□ -0.58
TRIM28-210ENST00000597618 CNTNAP2Q9UHC6 1331 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 MYH9P35579 1960 aaKnown RBP11.4□□□□□ -0.58
TRIM28-210ENST00000597618 C2orf16Q68DN1 1984 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 A0A087WZ62 844 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 ESYT2A0FGR8 921 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 ANHXE9PGG2 379 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 C2CD2LO14523 706 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 SLC27A2O14975 620 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 TEX28O15482 410 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 ZBTB43O43298 467 aa11.4□□□□□ -0.58
TRIM28-210ENST00000597618 PAPLNO95428 1278 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms