RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 POU5F1Q01860 360 aaKnown RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SPIRE1Q08AE8 756 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 ABCB5Q2M3G0 1257 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 QRICH1Q2TAL8 776 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 GJB7Q6PEY0 223 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 HOOK3Q86VS8 718 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 CDAN1Q8IWY9 1227 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SLC30A5Q8TAD4 765 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 ETNPPLQ8TBG4 499 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 RFFLQ8WZ73 363 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 P3H4Q92791 437 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 TATDN2Q93075 761 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SCAF8Q9UPN6 1271 aaKnown RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 PCDHA1Q9Y5I3 950 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 GOLGA6L10A0A0M3HER8 536 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 PPP1R12BO60237 982 aaPredicted RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 EVI5O60447 810 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 BUB1BO60566 1050 aaPredicted RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SPATA31C1P0DKV0 1188 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SOX5P35711 763 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 ARHGAP4P98171 946 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 CLUL1Q15846 466 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 Q4G0T1 1027 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 PRR16Q569H4 304 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 ANKRD20A8PQ5CZ79 823 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 GKAP1Q5VSY0 366 aaPredicted RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 MIGA2Q7L4E1 593 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 CPLX4Q7Z7G2 160 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 LNX1Q8TBB1 728 aaPredicted RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SLC35G2Q8TBE7 412 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 ZC3H15Q8WU90 426 aaKnown RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 CTNNBL1Q8WYA6 563 aaPredicted RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 CENPTQ96BT3 561 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 DCPSQ96C86 337 aaKnown RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 TLCD1Q96CP7 247 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 TRIM51Q9BSJ1 452 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 TXLNGYQ9BZA5 131 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 OSBPL7Q9BZF2 842 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SIPA1L1O43166 1804 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 DCDC2CA8MYV0 355 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 CLIC2O15247 247 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 DDX3YO15523 660 aaKnown RBP11.73□□□□□ -0.53
VPS4B-206ENST00000591475 GAP43P17677 238 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 EPHX2P34913 555 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 DR1Q01658 176 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 PPARDQ03181 441 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 LACTB2Q53H82 288 aaPredicted RBP11.73□□□□□ -0.53
VPS4B-206ENST00000591475 RPAINQ86UA6 219 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 TAX1BP1Q86VP1 789 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 FMNL3Q8IVF7 1028 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 CCDC50Q8IVM0 306 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 ATP8B4Q8TF62 1192 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 FAM20AQ96MK3 541 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 JPH2Q9BR39 696 aaPredicted RBP11.73□□□□□ -0.53
VPS4B-206ENST00000591475 TACO1Q9BSH4 297 aaKnown RBP11.73□□□□□ -0.53
VPS4B-206ENST00000591475 CARD9Q9H257 536 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 ATP8A1Q9Y2Q0 1164 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 PCDHB13Q9Y5F0 798 aa11.73□□□□□ -0.53
VPS4B-206ENST00000591475 FAM187AA6NFU0 413 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 RSPH10B2B2RC85 870 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 CCDC172P0C7W6 258 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 RSPH10BP0C881 870 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DRD4P21917 467 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 PSMC2P35998 433 aaKnown RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 PPATQ06203 517 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 PRPF4BQ13523 1007 aaKnown RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 BYSLQ13895 437 aaKnown RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DHX34Q14147 1143 aaKnown RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DUPD1Q68J44 220 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 PNMA8AQ86V59 439 aaPredicted RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 GLYCTKQ8IVS8 523 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 FAM186BQ8IYM0 893 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 GPATCH11Q8N954 259 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 CRYGNQ8WXF5 182 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 ZKSCAN4Q969J2 545 aaPredicted RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 BORCS6Q96GS4 357 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 XPO6Q96QU8 1125 aaKnown RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 ERP44Q9BS26 406 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 STK33Q9BYT3 514 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 TRIM31Q9BZY9 425 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 CD248Q9HCU0 757 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 OSGEPQ9NPF4 335 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 PPP1R9AQ9ULJ8 1098 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DAAM1Q9Y4D1 1078 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DNM1LO00429 736 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 MEIS2O14770 477 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 EIF3DO15371 548 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 GDF11O95390 407 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 EYA4O95677 639 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 GH2P01242 217 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 NUDT17P0C025 328 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 GHRP10912 638 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 PLS1Q14651 629 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 SNCBQ16143 134 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 ERMARDQ5T6L9 678 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 NBPF12Q5TAG4 269 aaPredicted RBP11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DCAF12L1Q5VU92 463 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DCAF15Q66K64 600 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 SULF1Q8IWU6 871 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 DCAF4Q8WV16 495 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms