RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 DIAPH3Q9NSV4 1193 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 TBC1D13Q9NVG8 400 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 ANGPTL2Q9UKU9 493 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 ZFP37Q9Y6Q3 630 aaPredicted RBP12.47□□□□□ -0.41
ZNF540-209ENST00000590588 NUMBLQ9Y6R0 609 aa12.47□□□□□ -0.41
ZNF540-209ENST00000590588 LAMA4Q16363 1823 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 USP24Q9UPU5 2620 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 ASPMQ8IZT6 3477 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 DDX39AO00148 427 aaKnown RBP12.46□□□□□ -0.41
ZNF540-209ENST00000590588 HIP1O00291 1037 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 CCNE2O96020 404 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 ADH1AP07327 375 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 DARSP14868 501 aaKnown RBP12.46□□□□□ -0.41
ZNF540-209ENST00000590588 PHKA2P46019 1235 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 SLC11A1P49279 550 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 GNAQP50148 359 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 CLCN3P51790 818 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 HTR4Q13639 388 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 UBXN2BQ14CS0 331 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 SLC44A4Q53GD3 710 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 RSPO2Q6UXX9 243 aaPredicted RBP12.46□□□□□ -0.41
ZNF540-209ENST00000590588 TRMT1LQ7Z2T5 733 aaKnown RBP12.46□□□□□ -0.41
ZNF540-209ENST00000590588 HDAC7Q8WUI4 952 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 DDX1Q92499 740 aaKnown RBP12.46□□□□□ -0.41
ZNF540-209ENST00000590588 TRAIPQ9BWF2 469 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 FAM126AQ9BYI3 521 aaPredicted RBP12.46□□□□□ -0.41
ZNF540-209ENST00000590588 GBP3Q9H0R5 595 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 DNAJB4Q9UDY4 337 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 RAB23Q9ULC3 237 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 MAFBQ9Y5Q3 323 aaPredicted RBP12.46□□□□□ -0.41
ZNF540-209ENST00000590588 C2orf16Q68DN1 1984 aa12.46□□□□□ -0.41
ZNF540-209ENST00000590588 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-209ENST00000590588 MEIS1O00470 390 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 NCAM2O15394 837 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 OFD1O75665 1012 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 RFPL2O75678 378 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 PAPLNO95428 1278 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 GLUD1P00367 558 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 FGFR4P22455 802 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 GPC3P51654 580 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 AK2P54819 239 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 SPEM2Q0P670 501 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 MLF2Q15773 248 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-209ENST00000590588 ZBTB41Q5SVQ8 909 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 GET4Q7L5D6 327 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-209ENST00000590588 PHKBQ93100 1093 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 SCLT1Q96NL6 688 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 NELL2Q99435 816 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 NT5C3AQ9H0P0 336 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 PLEKHA4Q9H4M7 779 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 INPP5FQ9Y2H2 1132 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 FAN1Q9Y2M0 1017 aa12.45□□□□□ -0.42
ZNF540-209ENST00000590588 MTF2Q9Y483 593 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-209ENST00000590588 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.45□□□□□ -0.42
ZNF540-209ENST00000590588 C2CD2LO14523 706 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 TEX28O15482 410 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 LRP3O75074 770 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 C1RP00736 705 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 SOD2P04179 222 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 URODP06132 367 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 CDC42EP1Q00587 391 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 PFKPQ01813 784 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 LONRF3Q496Y0 759 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 ZNF280BQ86YH2 543 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 CELF5Q8N6W0 485 aaKnown RBP12.44□□□□□ -0.42
ZNF540-209ENST00000590588 LINC01465Q8N7H1 131 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 NLRP7Q8WX94 980 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 LPPQ93052 612 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 ZNF707Q96C28 371 aaPredicted RBP12.44□□□□□ -0.42
ZNF540-209ENST00000590588 ZNF668Q96K58 619 aaPredicted RBP12.44□□□□□ -0.42
ZNF540-209ENST00000590588 FAM193BQ96PV7 902 aaPredicted RBP12.44□□□□□ -0.42
ZNF540-209ENST00000590588 RPS6KC1Q96S38 1066 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 TMEM175Q9BSA9 504 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 RPP25Q9BUL9 199 aaKnown RBP12.44□□□□□ -0.42
ZNF540-209ENST00000590588 LY9Q9HBG7 655 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 LTB4R2Q9NPC1 389 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 ZDHHC7Q9NXF8 308 aa12.44□□□□□ -0.42
ZNF540-209ENST00000590588 GAS2O43903 313 aaKnown RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 ZNF623O75123 536 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 DDAH1O94760 285 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 FOSP01100 380 aaPredicted RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 RETP07949 1114 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 MYBP10242 640 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 ZNF76P36508 570 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 RPS9P46781 194 aaKnown RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 NRLP54845 237 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 LAIR1Q6GTX8 287 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 TWF2Q6IBS0 349 aaKnown RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 TSSK4Q6SA08 328 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 NIPA1Q7RTP0 329 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 RALYLQ86SE5 291 aaKnown RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 LRRC71Q8N4P6 559 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 SRBD1Q8N5C6 995 aaKnown RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 ST13P5Q8NFI4 369 aaPredicted RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 NCOA7Q8NI08 942 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 URGCPQ8TCY9 931 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 IGDCC4Q8TDY8 1250 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 FGF14Q92915 247 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 CLDN23Q96B33 292 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 PGBD4Q96DM1 585 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms